Cargando…
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
High-throughput sequencing has revolutionized microbial ecology, but read quality remains a significant barrier to accurate taxonomy assignment and alpha diversity assessment for microbial communities. We demonstrate that high-quality read length and abundance are the primary factors differentiating...
Autores principales: | Bokulich, Nicholas A., Subramanian, Sathish, Faith, Jeremiah J., Gevers, Dirk, Gordon, Jeffrey I., Knight, Rob, Mills, David A., Caporaso, J. Gregory |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3531572/ https://www.ncbi.nlm.nih.gov/pubmed/23202435 http://dx.doi.org/10.1038/nmeth.2276 |
Ejemplares similares
-
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
por: Taylor, D. Lee, et al.
Publicado: (2016) -
Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
por: Bokulich, Nicholas A., et al.
Publicado: (2018) -
MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing
por: Parikh, Hardik I., et al.
Publicado: (2016) -
Illumina sequencing of 15 deafness genes using fragmented amplicons
por: Van Nieuwerburgh, Filip, et al.
Publicado: (2014) -
Adapterama II: universal amplicon sequencing on Illumina platforms (TaggiMatrix)
por: Glenn, Travis C., et al.
Publicado: (2019)