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Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6

BACKGROUND: For titer assessment of human herpesvirus 6 (HHV-6), IFA targeting viral proteins or a TCID(50) method with ocular inspection for CPE can be used. These methods rely on the subjective decision of the assessor, obstructing the ability to obtain unanimous results. FINDINGS: We have develop...

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Detalles Bibliográficos
Autores principales: Gustafsson, Rasmus K L, Engdahl, Elin E, Fogdell-Hahn, Anna
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546908/
https://www.ncbi.nlm.nih.gov/pubmed/23249654
http://dx.doi.org/10.1186/1743-422X-9-311
Descripción
Sumario:BACKGROUND: For titer assessment of human herpesvirus 6 (HHV-6), IFA targeting viral proteins or a TCID(50) method with ocular inspection for CPE can be used. These methods rely on the subjective decision of the assessor, obstructing the ability to obtain unanimous results. FINDINGS: We have developed and validated an alternative TCID(50) read-out approach where infection in the titration culture plate is assessed by viral DNA load change by quantitative PCR. A ten time increase in viral DNA load was determined as cut point for infection since that yielded a maximum correlation with viral protein expression (93%). The average intra-assay CV was 9% for quantitative PCR read-out of TCID(50) compared to 45% for ocular inspection read-out of TCID(50), 14% for IFA read-out of TCID(50), and 43% for an infectious units approach using IFA. The average inter-assay CV for quantitative PCR read-out of TCID(50) was 73%, compared to 66%, 25% and 77% for the ocular inspection read-out for TCID(50), IFA read-out of TCID(50) and infectious unit approaches respectively. CONCLUSIONS: The quantitative PCR based read-out of TCID(50) proved to be more robust and easier to interpret than traditional TCID(50) assessment approaches for HHV-6, and therefore it might be considered as an alternative method.