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Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6
BACKGROUND: For titer assessment of human herpesvirus 6 (HHV-6), IFA targeting viral proteins or a TCID(50) method with ocular inspection for CPE can be used. These methods rely on the subjective decision of the assessor, obstructing the ability to obtain unanimous results. FINDINGS: We have develop...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546908/ https://www.ncbi.nlm.nih.gov/pubmed/23249654 http://dx.doi.org/10.1186/1743-422X-9-311 |
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author | Gustafsson, Rasmus K L Engdahl, Elin E Fogdell-Hahn, Anna |
author_facet | Gustafsson, Rasmus K L Engdahl, Elin E Fogdell-Hahn, Anna |
author_sort | Gustafsson, Rasmus K L |
collection | PubMed |
description | BACKGROUND: For titer assessment of human herpesvirus 6 (HHV-6), IFA targeting viral proteins or a TCID(50) method with ocular inspection for CPE can be used. These methods rely on the subjective decision of the assessor, obstructing the ability to obtain unanimous results. FINDINGS: We have developed and validated an alternative TCID(50) read-out approach where infection in the titration culture plate is assessed by viral DNA load change by quantitative PCR. A ten time increase in viral DNA load was determined as cut point for infection since that yielded a maximum correlation with viral protein expression (93%). The average intra-assay CV was 9% for quantitative PCR read-out of TCID(50) compared to 45% for ocular inspection read-out of TCID(50), 14% for IFA read-out of TCID(50), and 43% for an infectious units approach using IFA. The average inter-assay CV for quantitative PCR read-out of TCID(50) was 73%, compared to 66%, 25% and 77% for the ocular inspection read-out for TCID(50), IFA read-out of TCID(50) and infectious unit approaches respectively. CONCLUSIONS: The quantitative PCR based read-out of TCID(50) proved to be more robust and easier to interpret than traditional TCID(50) assessment approaches for HHV-6, and therefore it might be considered as an alternative method. |
format | Online Article Text |
id | pubmed-3546908 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-35469082013-01-17 Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 Gustafsson, Rasmus K L Engdahl, Elin E Fogdell-Hahn, Anna Virol J Short Report BACKGROUND: For titer assessment of human herpesvirus 6 (HHV-6), IFA targeting viral proteins or a TCID(50) method with ocular inspection for CPE can be used. These methods rely on the subjective decision of the assessor, obstructing the ability to obtain unanimous results. FINDINGS: We have developed and validated an alternative TCID(50) read-out approach where infection in the titration culture plate is assessed by viral DNA load change by quantitative PCR. A ten time increase in viral DNA load was determined as cut point for infection since that yielded a maximum correlation with viral protein expression (93%). The average intra-assay CV was 9% for quantitative PCR read-out of TCID(50) compared to 45% for ocular inspection read-out of TCID(50), 14% for IFA read-out of TCID(50), and 43% for an infectious units approach using IFA. The average inter-assay CV for quantitative PCR read-out of TCID(50) was 73%, compared to 66%, 25% and 77% for the ocular inspection read-out for TCID(50), IFA read-out of TCID(50) and infectious unit approaches respectively. CONCLUSIONS: The quantitative PCR based read-out of TCID(50) proved to be more robust and easier to interpret than traditional TCID(50) assessment approaches for HHV-6, and therefore it might be considered as an alternative method. BioMed Central 2012-12-18 /pmc/articles/PMC3546908/ /pubmed/23249654 http://dx.doi.org/10.1186/1743-422X-9-311 Text en Copyright ©2012 Gustafsson et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Report Gustafsson, Rasmus K L Engdahl, Elin E Fogdell-Hahn, Anna Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title | Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title_full | Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title_fullStr | Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title_full_unstemmed | Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title_short | Development and validation of a Q-PCR based TCID(50) method for human herpesvirus 6 |
title_sort | development and validation of a q-pcr based tcid(50) method for human herpesvirus 6 |
topic | Short Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3546908/ https://www.ncbi.nlm.nih.gov/pubmed/23249654 http://dx.doi.org/10.1186/1743-422X-9-311 |
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