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Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases

P-loop NTPases represent a large and highly diverse protein family that is involved in variety of cellular functions. Walker A motif forms a typical arched conformation, necessary to accommodate the phosphate moiety of the nucleoside tri (or di-) phosphate in Ploop NTPases. The feature that maintain...

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Detalles Bibliográficos
Autores principales: Pathak, Ekta, Atri, Neelam, Mishra, Rajeev
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3563412/
https://www.ncbi.nlm.nih.gov/pubmed/23390340
http://dx.doi.org/10.6026/97320630009023
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author Pathak, Ekta
Atri, Neelam
Mishra, Rajeev
author_facet Pathak, Ekta
Atri, Neelam
Mishra, Rajeev
author_sort Pathak, Ekta
collection PubMed
description P-loop NTPases represent a large and highly diverse protein family that is involved in variety of cellular functions. Walker A motif forms a typical arched conformation, necessary to accommodate the phosphate moiety of the nucleoside tri (or di-) phosphate in Ploop NTPases. The feature that maintains the ancient architecture of P-loop is unidentified and uncharacterized. Here, using a well established global network parameter, closeness centrality, we identify that Walker A and its flanking regions (N- and C-terminal) have high density of globally connected residue positions. We find that closeness centrality of these residue positions are conserved across common structural core of diverse domains of P-loop NTPase fold. Our results suggest the potential role of globally connected residues in maintaining the local conformation of P-loop.
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spelling pubmed-35634122013-02-06 Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases Pathak, Ekta Atri, Neelam Mishra, Rajeev Bioinformation Hypothesis P-loop NTPases represent a large and highly diverse protein family that is involved in variety of cellular functions. Walker A motif forms a typical arched conformation, necessary to accommodate the phosphate moiety of the nucleoside tri (or di-) phosphate in Ploop NTPases. The feature that maintains the ancient architecture of P-loop is unidentified and uncharacterized. Here, using a well established global network parameter, closeness centrality, we identify that Walker A and its flanking regions (N- and C-terminal) have high density of globally connected residue positions. We find that closeness centrality of these residue positions are conserved across common structural core of diverse domains of P-loop NTPase fold. Our results suggest the potential role of globally connected residues in maintaining the local conformation of P-loop. Biomedical Informatics 2013-01-09 /pmc/articles/PMC3563412/ /pubmed/23390340 http://dx.doi.org/10.6026/97320630009023 Text en © 2013 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Hypothesis
Pathak, Ekta
Atri, Neelam
Mishra, Rajeev
Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title_full Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title_fullStr Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title_full_unstemmed Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title_short Role of highly central residues of P-loop and it's flanking region in preserving the archetypal conformation of Walker A motif of diverse P-loop NTPases
title_sort role of highly central residues of p-loop and it's flanking region in preserving the archetypal conformation of walker a motif of diverse p-loop ntpases
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3563412/
https://www.ncbi.nlm.nih.gov/pubmed/23390340
http://dx.doi.org/10.6026/97320630009023
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