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An Artificial Functional Family Filter in Homolog Searching in Next-generation Sequencing Metagenomics

In functional metagenomics, BLAST homology search is a common method to classify metagenomic reads into protein/domain sequence families such as Clusters of Orthologous Groups of proteins (COGs) in order to quantify the abundance of each COG in the community. The resulting functional profile of the...

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Detalles Bibliográficos
Autores principales: Du, Ruofei, Mercante, Donald, Fang, Zhide
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3597637/
https://www.ncbi.nlm.nih.gov/pubmed/23516532
http://dx.doi.org/10.1371/journal.pone.0058669