CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions

BACKGROUND: The maximal sensitivity for local alignments makes the Smith-Waterman algorithm a popular choice for protein sequence database search based on pairwise alignment. However, the algorithm is compute-intensive due to a quadratic time complexity. Corresponding runtimes are further compounded...

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Detalles Bibliográficos
Autores principales: Liu, Yongchao, Wirawan, Adrianto, Schmidt, Bertil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637623/
https://www.ncbi.nlm.nih.gov/pubmed/23557111
http://dx.doi.org/10.1186/1471-2105-14-117

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3637623/
https://www.ncbi.nlm.nih.gov/pubmed/23557111
http://dx.doi.org/10.1186/1471-2105-14-117

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