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Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis
BACKGROUND: BANK1 and BLK belong to the pleiotropic autoimmune genes; recently, epistasis between BANK1 and BLK was detected in systemic lupus erythematosus. Although BLK has been reproducibly identified as a risk factor in rheumatoid arthritis (RA), reports are conflicting about the contribution of...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639995/ https://www.ncbi.nlm.nih.gov/pubmed/23646104 http://dx.doi.org/10.1371/journal.pone.0061044 |
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author | Génin, Emmanuelle Coustet, Baptiste Allanore, Yannick Ito, Ikue Teruel, Maria Constantin, Arnaud Schaeverbeke, Thierry Ruyssen-Witrand, Adeline Tohma, Shigeto Cantagrel, Alain Vittecoq, Olivier Barnetche, Thomas Le Loët, Xavier Fardellone, Patrice Furukawa, Hiroshi Meyer, Olivier Fernández-Gutiérrez, Benjamin Balsa, Alejandro González-Gay, Miguel A. Chiocchia, Gilles Tsuchiya, Naoyuki Martin, Javier Dieudé, Philippe |
author_facet | Génin, Emmanuelle Coustet, Baptiste Allanore, Yannick Ito, Ikue Teruel, Maria Constantin, Arnaud Schaeverbeke, Thierry Ruyssen-Witrand, Adeline Tohma, Shigeto Cantagrel, Alain Vittecoq, Olivier Barnetche, Thomas Le Loët, Xavier Fardellone, Patrice Furukawa, Hiroshi Meyer, Olivier Fernández-Gutiérrez, Benjamin Balsa, Alejandro González-Gay, Miguel A. Chiocchia, Gilles Tsuchiya, Naoyuki Martin, Javier Dieudé, Philippe |
author_sort | Génin, Emmanuelle |
collection | PubMed |
description | BACKGROUND: BANK1 and BLK belong to the pleiotropic autoimmune genes; recently, epistasis between BANK1 and BLK was detected in systemic lupus erythematosus. Although BLK has been reproducibly identified as a risk factor in rheumatoid arthritis (RA), reports are conflicting about the contribution of BANK1 to RA susceptibility. To ascertain the real impact of BANK1 on RA genetic susceptibility, we performed a large meta-analysis including our original data and tested for an epistatic interaction between BANK1 and BLK in RA susceptibility. PATIENTS AND METHODS: We investigated data for 1,915 RA patients and 1,915 ethnically matched healthy controls genotyped for BANK1 rs10516487 and rs3733197 and BLK rs13277113. The association of each SNP and RA was tested by logistic regression. Multivariate analysis was then used with an interaction term to test for an epistatic interaction between the SNPs in the 2 genes. RESULTS: None of the SNPs tested individually was significantly associated with RA in the genotyped samples. However, we detected an epistatic interaction between BANK1 rs3733197 and BLK rs13277113 (P(interaction) = 0.037). In individuals carrying the BLK rs13277113 GG genotype, presence of the BANK1 rs3733197 G allele increased the risk of RA (odds ratio 1.21 [95% confidence interval 1.04–1.41], P = 0.015. Combining our results with those of all other studies in a large trans-ethnic meta-analysis revealed an association of the BANK1 rs3733197 G allele and RA (1.11 [1.02–1.21], P = 0.012). CONCLUSION: This study confirms BANK1 as an RA susceptibility gene and for the first time provides evidence for epistasis between BANK1 and BLK in RA. Our results illustrate the concept of pleiotropic epistatic interaction, suggesting that BANK1 and BLK might play a role in RA pathogenesis. |
format | Online Article Text |
id | pubmed-3639995 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-36399952013-05-03 Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis Génin, Emmanuelle Coustet, Baptiste Allanore, Yannick Ito, Ikue Teruel, Maria Constantin, Arnaud Schaeverbeke, Thierry Ruyssen-Witrand, Adeline Tohma, Shigeto Cantagrel, Alain Vittecoq, Olivier Barnetche, Thomas Le Loët, Xavier Fardellone, Patrice Furukawa, Hiroshi Meyer, Olivier Fernández-Gutiérrez, Benjamin Balsa, Alejandro González-Gay, Miguel A. Chiocchia, Gilles Tsuchiya, Naoyuki Martin, Javier Dieudé, Philippe PLoS One Research Article BACKGROUND: BANK1 and BLK belong to the pleiotropic autoimmune genes; recently, epistasis between BANK1 and BLK was detected in systemic lupus erythematosus. Although BLK has been reproducibly identified as a risk factor in rheumatoid arthritis (RA), reports are conflicting about the contribution of BANK1 to RA susceptibility. To ascertain the real impact of BANK1 on RA genetic susceptibility, we performed a large meta-analysis including our original data and tested for an epistatic interaction between BANK1 and BLK in RA susceptibility. PATIENTS AND METHODS: We investigated data for 1,915 RA patients and 1,915 ethnically matched healthy controls genotyped for BANK1 rs10516487 and rs3733197 and BLK rs13277113. The association of each SNP and RA was tested by logistic regression. Multivariate analysis was then used with an interaction term to test for an epistatic interaction between the SNPs in the 2 genes. RESULTS: None of the SNPs tested individually was significantly associated with RA in the genotyped samples. However, we detected an epistatic interaction between BANK1 rs3733197 and BLK rs13277113 (P(interaction) = 0.037). In individuals carrying the BLK rs13277113 GG genotype, presence of the BANK1 rs3733197 G allele increased the risk of RA (odds ratio 1.21 [95% confidence interval 1.04–1.41], P = 0.015. Combining our results with those of all other studies in a large trans-ethnic meta-analysis revealed an association of the BANK1 rs3733197 G allele and RA (1.11 [1.02–1.21], P = 0.012). CONCLUSION: This study confirms BANK1 as an RA susceptibility gene and for the first time provides evidence for epistasis between BANK1 and BLK in RA. Our results illustrate the concept of pleiotropic epistatic interaction, suggesting that BANK1 and BLK might play a role in RA pathogenesis. Public Library of Science 2013-04-30 /pmc/articles/PMC3639995/ /pubmed/23646104 http://dx.doi.org/10.1371/journal.pone.0061044 Text en © 2013 Génin et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Génin, Emmanuelle Coustet, Baptiste Allanore, Yannick Ito, Ikue Teruel, Maria Constantin, Arnaud Schaeverbeke, Thierry Ruyssen-Witrand, Adeline Tohma, Shigeto Cantagrel, Alain Vittecoq, Olivier Barnetche, Thomas Le Loët, Xavier Fardellone, Patrice Furukawa, Hiroshi Meyer, Olivier Fernández-Gutiérrez, Benjamin Balsa, Alejandro González-Gay, Miguel A. Chiocchia, Gilles Tsuchiya, Naoyuki Martin, Javier Dieudé, Philippe Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title | Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title_full | Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title_fullStr | Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title_full_unstemmed | Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title_short | Epistatic Interaction between BANK1 and BLK in Rheumatoid Arthritis: Results from a Large Trans-Ethnic Meta-Analysis |
title_sort | epistatic interaction between bank1 and blk in rheumatoid arthritis: results from a large trans-ethnic meta-analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3639995/ https://www.ncbi.nlm.nih.gov/pubmed/23646104 http://dx.doi.org/10.1371/journal.pone.0061044 |
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