SPANNER: taxonomic assignment of sequences using pyramid matching of similarity profiles

Background: Homology-based taxonomic assignment is impeded by differences between the unassigned read and reference database, forcing a rank-specific classification to the closest (and possibly incorrect) reference lineage. This assignment may be correct only to a general rank (e.g. order) and incor...

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Detalles Bibliográficos
Autores principales: Porter, Michael S., Beiko, Robert G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Original Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712219/
https://www.ncbi.nlm.nih.gov/pubmed/23732273
http://dx.doi.org/10.1093/bioinformatics/btt313

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3712219/
https://www.ncbi.nlm.nih.gov/pubmed/23732273
http://dx.doi.org/10.1093/bioinformatics/btt313

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