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Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study

We study by means of analytical calculation and stochastic simulations how intrinsic noise modifies the bifurcation diagram of gene regulatory processes that can be effectively described by the Langevin formalism. In a general context, our study raises the intriguing question of how biochemical fluc...

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Detalles Bibliográficos
Autores principales: Weber, Marc, Buceta, Javier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770683/
https://www.ncbi.nlm.nih.gov/pubmed/24039958
http://dx.doi.org/10.1371/journal.pone.0073487
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author Weber, Marc
Buceta, Javier
author_facet Weber, Marc
Buceta, Javier
author_sort Weber, Marc
collection PubMed
description We study by means of analytical calculation and stochastic simulations how intrinsic noise modifies the bifurcation diagram of gene regulatory processes that can be effectively described by the Langevin formalism. In a general context, our study raises the intriguing question of how biochemical fluctuations redesign the epigenetic landscape in differentiation processes. We have applied our findings to a general class of regulatory processes that includes the simplest case that displays a bistable behavior and hence phenotypic variability: the genetic auto-activating switch. Thus, we explain why and how the noise promotes the stability of the low-state phenotype of the switch and show that the bistable region is extended when increasing the intensity of the fluctuations. This phenomenology is found in a simple one-dimensional model of the genetic switch as well as in a more detailed model that takes into account the binding of the protein to the promoter region. Altogether, we prescribe the analytical means to understand and quantify the noise-induced modifications of the bifurcation points for a general class of regulatory processes where the genetic bistable switch is included.
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spelling pubmed-37706832013-09-13 Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study Weber, Marc Buceta, Javier PLoS One Research Article We study by means of analytical calculation and stochastic simulations how intrinsic noise modifies the bifurcation diagram of gene regulatory processes that can be effectively described by the Langevin formalism. In a general context, our study raises the intriguing question of how biochemical fluctuations redesign the epigenetic landscape in differentiation processes. We have applied our findings to a general class of regulatory processes that includes the simplest case that displays a bistable behavior and hence phenotypic variability: the genetic auto-activating switch. Thus, we explain why and how the noise promotes the stability of the low-state phenotype of the switch and show that the bistable region is extended when increasing the intensity of the fluctuations. This phenomenology is found in a simple one-dimensional model of the genetic switch as well as in a more detailed model that takes into account the binding of the protein to the promoter region. Altogether, we prescribe the analytical means to understand and quantify the noise-induced modifications of the bifurcation points for a general class of regulatory processes where the genetic bistable switch is included. Public Library of Science 2013-09-11 /pmc/articles/PMC3770683/ /pubmed/24039958 http://dx.doi.org/10.1371/journal.pone.0073487 Text en © 2013 Weber, Buceta http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Weber, Marc
Buceta, Javier
Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title_full Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title_fullStr Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title_full_unstemmed Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title_short Stochastic Stabilization of Phenotypic States: The Genetic Bistable Switch as a Case Study
title_sort stochastic stabilization of phenotypic states: the genetic bistable switch as a case study
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3770683/
https://www.ncbi.nlm.nih.gov/pubmed/24039958
http://dx.doi.org/10.1371/journal.pone.0073487
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