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SW#–GPU-enabled exact alignments on genome scale

Summary: We propose SW#, a new CUDA graphical processor unit-enabled and memory-efficient implementation of dynamic programming algorithm, for local alignment. It can be used as either a stand-alone application or a library. Although there are other graphical processor unit implementations of the Sm...

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Detalles Bibliográficos
Autores principales: Korpar, Matija, Šikić, Mile
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3777108/
https://www.ncbi.nlm.nih.gov/pubmed/23864730
http://dx.doi.org/10.1093/bioinformatics/btt410