Cargando…

Integrative analysis of tissue-specific methylation and alternative splicing identifies conserved transcription factor binding motifs

The exact role of intragenic DNA methylation in regulating tissue-specific gene regulation is unclear. Recently, the DNA-binding protein CTCF has been shown to participate in the regulation of alternative splicing in a DNA methylation-dependent manner. To globally evaluate the relationship between D...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wan, Jun, Oliver, Verity F., Zhu, Heng, Zack, Donald J., Qian, Jiang, Merbs, Shannath L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2013
Materias:	Gene Regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3794605/ https://www.ncbi.nlm.nih.gov/pubmed/23887936 http://dx.doi.org/10.1093/nar/gkt652

Ejemplares similares

Dynamic usage of alternative splicing exons during mouse retina development
por: Wan, Jun, et al.
Publicado: (2011)

Histone H1.5 binds over splice sites in chromatin and regulates alternative splicing
por: Glaich, Ohad, et al.
Publicado: (2019)

SRRM2 organizes splicing condensates to regulate alternative splicing
por: Xu, Shaohai, et al.
Publicado: (2022)

Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1
por: Tauber, Maria, et al.
Publicado: (2020)

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana
por: Streitner, Corinna, et al.
Publicado: (2012)

The role of the conserved phenylalanine in the σ(54)-interacting GAFTGA motif of bacterial enhancer binding proteins
por: Zhang, Nan, et al.
Publicado: (2009)

Evolutionarily conserved autoregulation of alternative pre-mRNA splicing by ribosomal protein L10a
por: Takei, Satomi, et al.
Publicado: (2016)

Functional characterization of alternatively spliced human SECISBP2 transcript variants
por: Papp, Laura V., et al.
Publicado: (2008)

CD44 alternative splicing senses intragenic DNA methylation in tumors via direct and indirect mechanisms
por: Batsché, Eric, et al.
Publicado: (2021)

Identification of DNA motifs that regulate DNA methylation
por: Wang, Mengchi, et al.
Publicado: (2019)

CARM1 automethylation is controlled at the level of alternative splicing
por: Wang, Lu, et al.
Publicado: (2013)

The RNA recognition motif protein RBM11 is a novel tissue-specific splicing regulator
por: Pedrotti, Simona, et al.
Publicado: (2012)

The conserved elongation factor Spn1 is required for normal transcription, histone modifications, and splicing in Saccharomyces cerevisiae
por: Reim, Natalia I, et al.
Publicado: (2020)

Sudemycin E influences alternative splicing and changes chromatin modifications
por: Convertini, Paolo, et al.
Publicado: (2014)

Sam68 marks the transcriptionally active stages of spermatogenesis and modulates alternative splicing in male germ cells
por: Paronetto, Maria Paola, et al.
Publicado: (2011)

The histone chaperone sNASP binds a conserved peptide motif within the globular core of histone H3 through its TPR repeats
por: Bowman, Andrew, et al.
Publicado: (2016)

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro
por: Raiber, Eun-Ang, et al.
Publicado: (2012)

Physiological state co-regulates thousands of mammalian mRNA splicing events at tandem splice sites and alternative exons
por: Szafranski, Karol, et al.
Publicado: (2014)

ICF-specific DNMT3B dysfunction interferes with intragenic regulation of mRNA transcription and alternative splicing
por: Gatto, Sole, et al.
Publicado: (2017)

Exonic splicing code and protein binding sites for calcium
por: Pengelly, Reuben J, et al.
Publicado: (2022)

Conserved sequences in the Drosophila mod(mdg4) intron promote poly(A)-independent transcription termination and trans-splicing
por: Tikhonov, Maxim, et al.
Publicado: (2018)

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets
por: Nelson, Christopher S., et al.
Publicado: (2013)

Fox-3 and PSF interact to activate neural cell-specific alternative splicing
por: Kim, Kee K., et al.
Publicado: (2011)

RNA-dependent dynamic histone acetylation regulates MCL1 alternative splicing
por: Khan, Dilshad H., et al.
Publicado: (2014)

The Hox transcription factor Ultrabithorax binds RNA and regulates co-transcriptional splicing through an interplay with RNA polymerase II
por: Carnesecchi, Julie, et al.
Publicado: (2021)

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis
por: Kalyna, Maria, et al.
Publicado: (2012)

Eukaryotic TPP riboswitch regulation of alternative splicing involving long-distance base pairing
por: Li, Sanshu, et al.
Publicado: (2013)

Alternative splicing analysis in human monocytes and macrophages reveals MBNL1 as major regulator
por: Liu, Hongfei, et al.
Publicado: (2018)

Drosophila Sister-of-Sex-lethal reinforces a male-specific gene expression pattern by controlling Sex-lethal alternative splicing
por: Moschall, Rebecca, et al.
Publicado: (2019)

ChIP-seq reveals cell type-specific binding patterns of BMP-specific Smads and a novel binding motif
por: Morikawa, Masato, et al.
Publicado: (2011)

H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells
por: He, Runsheng, et al.
Publicado: (2017)

c-MYC empowers transcription and productive splicing of the oncogenic splicing factor Sam68 in cancer
por: Caggiano, Cinzia, et al.
Publicado: (2019)

Identification of a binding motif specific to HNF4 by comparative analysis of multiple nuclear receptors
por: Fang, Bin, et al.
Publicado: (2012)

Independence between pre-mRNA splicing and DNA methylation in an isogenic minigene resource
por: Nanan, Kyster K., et al.
Publicado: (2017)

Identification by high-throughput imaging of the histone methyltransferase EHMT2 as an epigenetic regulator of VEGFA alternative splicing
por: Salton, Maayan, et al.
Publicado: (2014)

The PRMT5/WDR77 complex regulates alternative splicing through ZNF326 in breast cancer
por: Rengasamy, Madhumitha, et al.
Publicado: (2017)

Spliceosomal protein U1A is involved in alternative splicing and salt stress tolerance in Arabidopsis thaliana
por: Gu, Jinbao, et al.
Publicado: (2018)

The dual role of LSD1 and HDAC3 in STAT5-dependent transcription is determined by protein interactions, binding affinities, motifs and genomic positions
por: Nanou, Aikaterini, et al.
Publicado: (2017)

The splicing regulator SLU7 is required to preserve DNMT1 protein stability and DNA methylation
por: Recalde, Miriam, et al.
Publicado: (2021)

Differential activation mechanisms of two isoforms of Gcr1 transcription factor generated from spliced and un-spliced transcripts in Saccharomyces cerevisiae
por: Cha, Seungwoo, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_fpugun18bkuvbl7lmutvesu8gf