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miRNAs confer phenotypic robustness to gene networks by suppressing biological noise

miRNAs are small non-coding RNAs able to modulate target-gene expression. It has been postulated that miRNAs confer robustness to biological processes, but a clear experimental evidence is still missing. Using a synthetic biology approach, we demonstrate that microRNAs provide phenotypic robustness...

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Detalles Bibliográficos
Autores principales: Siciliano, Velia, Garzilli, Immacolata, Fracassi, Chiara, Criscuolo, Stefania, Ventre, Simona, di Bernardo, Diego
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836244/
https://www.ncbi.nlm.nih.gov/pubmed/24077216
http://dx.doi.org/10.1038/ncomms3364
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author Siciliano, Velia
Garzilli, Immacolata
Fracassi, Chiara
Criscuolo, Stefania
Ventre, Simona
di Bernardo, Diego
author_facet Siciliano, Velia
Garzilli, Immacolata
Fracassi, Chiara
Criscuolo, Stefania
Ventre, Simona
di Bernardo, Diego
author_sort Siciliano, Velia
collection PubMed
description miRNAs are small non-coding RNAs able to modulate target-gene expression. It has been postulated that miRNAs confer robustness to biological processes, but a clear experimental evidence is still missing. Using a synthetic biology approach, we demonstrate that microRNAs provide phenotypic robustness to transcriptional regulatory networks by buffering fluctuations in protein levels. Here we construct a network motif in mammalian cells exhibiting a “toggle - switch” phenotype in which two alternative protein expression levels define its ON and OFF states. The motif consists of an inducible transcription factor that self-regulates its own transcription and that of a miRNA against the transcription factor itself. We confirm, using mathematical modeling and experimental approaches, that the microRNA confers robustness to the toggle-switch by enabling the cell to maintain and transmit its state. When absent, a dramatic increase in protein noise level occurs, causing the cell to randomly switch between the two states.
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spelling pubmed-38362442013-11-21 miRNAs confer phenotypic robustness to gene networks by suppressing biological noise Siciliano, Velia Garzilli, Immacolata Fracassi, Chiara Criscuolo, Stefania Ventre, Simona di Bernardo, Diego Nat Commun Article miRNAs are small non-coding RNAs able to modulate target-gene expression. It has been postulated that miRNAs confer robustness to biological processes, but a clear experimental evidence is still missing. Using a synthetic biology approach, we demonstrate that microRNAs provide phenotypic robustness to transcriptional regulatory networks by buffering fluctuations in protein levels. Here we construct a network motif in mammalian cells exhibiting a “toggle - switch” phenotype in which two alternative protein expression levels define its ON and OFF states. The motif consists of an inducible transcription factor that self-regulates its own transcription and that of a miRNA against the transcription factor itself. We confirm, using mathematical modeling and experimental approaches, that the microRNA confers robustness to the toggle-switch by enabling the cell to maintain and transmit its state. When absent, a dramatic increase in protein noise level occurs, causing the cell to randomly switch between the two states. 2013 /pmc/articles/PMC3836244/ /pubmed/24077216 http://dx.doi.org/10.1038/ncomms3364 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Siciliano, Velia
Garzilli, Immacolata
Fracassi, Chiara
Criscuolo, Stefania
Ventre, Simona
di Bernardo, Diego
miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title_full miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title_fullStr miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title_full_unstemmed miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title_short miRNAs confer phenotypic robustness to gene networks by suppressing biological noise
title_sort mirnas confer phenotypic robustness to gene networks by suppressing biological noise
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3836244/
https://www.ncbi.nlm.nih.gov/pubmed/24077216
http://dx.doi.org/10.1038/ncomms3364
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