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Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity

Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of...

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Autores principales: Sakuma, Tetsushi, Ochiai, Hiroshi, Kaneko, Takehito, Mashimo, Tomoji, Tokumasu, Daisuke, Sakane, Yuto, Suzuki, Ken-ichi, Miyamoto, Tatsuo, Sakamoto, Naoaki, Matsuura, Shinya, Yamamoto, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843162/
https://www.ncbi.nlm.nih.gov/pubmed/24287550
http://dx.doi.org/10.1038/srep03379
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author Sakuma, Tetsushi
Ochiai, Hiroshi
Kaneko, Takehito
Mashimo, Tomoji
Tokumasu, Daisuke
Sakane, Yuto
Suzuki, Ken-ichi
Miyamoto, Tatsuo
Sakamoto, Naoaki
Matsuura, Shinya
Yamamoto, Takashi
author_facet Sakuma, Tetsushi
Ochiai, Hiroshi
Kaneko, Takehito
Mashimo, Tomoji
Tokumasu, Daisuke
Sakane, Yuto
Suzuki, Ken-ichi
Miyamoto, Tatsuo
Sakamoto, Naoaki
Matsuura, Shinya
Yamamoto, Takashi
author_sort Sakuma, Tetsushi
collection PubMed
description Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of structurally different TALENs have not yet been compared. Here, we report on the functional differences among several types of TALENs targeting the same loci. Using HEK293T cell-based single-strand annealing and Cel-I nuclease assays, we found that TALENs with periodically-patterned repeat variants harboring non-repeat-variable di-residue (non-RVD) variations (Platinum TALENs) showed higher activities than TALENs without non-RVD variations. Furthermore, the efficiencies of gene disruption mediated by Platinum TALENs in frogs and rats were significantly higher than in previous reports. This study therefore demonstrated an efficient system for the construction of these highly active Platinum TALENs (Platinum Gate system), which could establish a new standard in TALEN engineering.
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spelling pubmed-38431622013-12-02 Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity Sakuma, Tetsushi Ochiai, Hiroshi Kaneko, Takehito Mashimo, Tomoji Tokumasu, Daisuke Sakane, Yuto Suzuki, Ken-ichi Miyamoto, Tatsuo Sakamoto, Naoaki Matsuura, Shinya Yamamoto, Takashi Sci Rep Article Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of structurally different TALENs have not yet been compared. Here, we report on the functional differences among several types of TALENs targeting the same loci. Using HEK293T cell-based single-strand annealing and Cel-I nuclease assays, we found that TALENs with periodically-patterned repeat variants harboring non-repeat-variable di-residue (non-RVD) variations (Platinum TALENs) showed higher activities than TALENs without non-RVD variations. Furthermore, the efficiencies of gene disruption mediated by Platinum TALENs in frogs and rats were significantly higher than in previous reports. This study therefore demonstrated an efficient system for the construction of these highly active Platinum TALENs (Platinum Gate system), which could establish a new standard in TALEN engineering. Nature Publishing Group 2013-11-29 /pmc/articles/PMC3843162/ /pubmed/24287550 http://dx.doi.org/10.1038/srep03379 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/
spellingShingle Article
Sakuma, Tetsushi
Ochiai, Hiroshi
Kaneko, Takehito
Mashimo, Tomoji
Tokumasu, Daisuke
Sakane, Yuto
Suzuki, Ken-ichi
Miyamoto, Tatsuo
Sakamoto, Naoaki
Matsuura, Shinya
Yamamoto, Takashi
Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title_full Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title_fullStr Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title_full_unstemmed Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title_short Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
title_sort repeating pattern of non-rvd variations in dna-binding modules enhances talen activity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843162/
https://www.ncbi.nlm.nih.gov/pubmed/24287550
http://dx.doi.org/10.1038/srep03379
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