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Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity
Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843162/ https://www.ncbi.nlm.nih.gov/pubmed/24287550 http://dx.doi.org/10.1038/srep03379 |
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author | Sakuma, Tetsushi Ochiai, Hiroshi Kaneko, Takehito Mashimo, Tomoji Tokumasu, Daisuke Sakane, Yuto Suzuki, Ken-ichi Miyamoto, Tatsuo Sakamoto, Naoaki Matsuura, Shinya Yamamoto, Takashi |
author_facet | Sakuma, Tetsushi Ochiai, Hiroshi Kaneko, Takehito Mashimo, Tomoji Tokumasu, Daisuke Sakane, Yuto Suzuki, Ken-ichi Miyamoto, Tatsuo Sakamoto, Naoaki Matsuura, Shinya Yamamoto, Takashi |
author_sort | Sakuma, Tetsushi |
collection | PubMed |
description | Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of structurally different TALENs have not yet been compared. Here, we report on the functional differences among several types of TALENs targeting the same loci. Using HEK293T cell-based single-strand annealing and Cel-I nuclease assays, we found that TALENs with periodically-patterned repeat variants harboring non-repeat-variable di-residue (non-RVD) variations (Platinum TALENs) showed higher activities than TALENs without non-RVD variations. Furthermore, the efficiencies of gene disruption mediated by Platinum TALENs in frogs and rats were significantly higher than in previous reports. This study therefore demonstrated an efficient system for the construction of these highly active Platinum TALENs (Platinum Gate system), which could establish a new standard in TALEN engineering. |
format | Online Article Text |
id | pubmed-3843162 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-38431622013-12-02 Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity Sakuma, Tetsushi Ochiai, Hiroshi Kaneko, Takehito Mashimo, Tomoji Tokumasu, Daisuke Sakane, Yuto Suzuki, Ken-ichi Miyamoto, Tatsuo Sakamoto, Naoaki Matsuura, Shinya Yamamoto, Takashi Sci Rep Article Transcription activator-like effector (TALE) nuclease (TALEN) is a site-specific nuclease, which can be freely designed and easily constructed. Numerous methods of constructing TALENs harboring different TALE scaffolds and repeat variants have recently been reported. However, the functionalities of structurally different TALENs have not yet been compared. Here, we report on the functional differences among several types of TALENs targeting the same loci. Using HEK293T cell-based single-strand annealing and Cel-I nuclease assays, we found that TALENs with periodically-patterned repeat variants harboring non-repeat-variable di-residue (non-RVD) variations (Platinum TALENs) showed higher activities than TALENs without non-RVD variations. Furthermore, the efficiencies of gene disruption mediated by Platinum TALENs in frogs and rats were significantly higher than in previous reports. This study therefore demonstrated an efficient system for the construction of these highly active Platinum TALENs (Platinum Gate system), which could establish a new standard in TALEN engineering. Nature Publishing Group 2013-11-29 /pmc/articles/PMC3843162/ /pubmed/24287550 http://dx.doi.org/10.1038/srep03379 Text en Copyright © 2013, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-sa/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-sa/3.0/ |
spellingShingle | Article Sakuma, Tetsushi Ochiai, Hiroshi Kaneko, Takehito Mashimo, Tomoji Tokumasu, Daisuke Sakane, Yuto Suzuki, Ken-ichi Miyamoto, Tatsuo Sakamoto, Naoaki Matsuura, Shinya Yamamoto, Takashi Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title | Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title_full | Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title_fullStr | Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title_full_unstemmed | Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title_short | Repeating pattern of non-RVD variations in DNA-binding modules enhances TALEN activity |
title_sort | repeating pattern of non-rvd variations in dna-binding modules enhances talen activity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3843162/ https://www.ncbi.nlm.nih.gov/pubmed/24287550 http://dx.doi.org/10.1038/srep03379 |
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