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Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance

Recently there has not been a systematic, objective assessment of the metabolic capabilities of the human platelet. A manually curated, functionally tested, and validated biochemical reaction network of platelet metabolism, iAT-PLT-636, was reconstructed using 33 proteomic datasets and 354 literatur...

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Autores principales: Thomas, Alex, Rahmanian, Sorena, Bordbar, Aarash, Palsson, Bernhard Ø., Jamshidi, Neema
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905279/
https://www.ncbi.nlm.nih.gov/pubmed/24473230
http://dx.doi.org/10.1038/srep03925
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author Thomas, Alex
Rahmanian, Sorena
Bordbar, Aarash
Palsson, Bernhard Ø.
Jamshidi, Neema
author_facet Thomas, Alex
Rahmanian, Sorena
Bordbar, Aarash
Palsson, Bernhard Ø.
Jamshidi, Neema
author_sort Thomas, Alex
collection PubMed
description Recently there has not been a systematic, objective assessment of the metabolic capabilities of the human platelet. A manually curated, functionally tested, and validated biochemical reaction network of platelet metabolism, iAT-PLT-636, was reconstructed using 33 proteomic datasets and 354 literature references. The network contains enzymes mapping to 403 diseases and 231 FDA approved drugs, alluding to an expansive scope of biochemical transformations that may affect or be affected by disease processes in multiple organ systems. The effect of aspirin (ASA) resistance on platelet metabolism was evaluated using constraint-based modeling, which revealed a redirection of glycolytic, fatty acid, and nucleotide metabolism reaction fluxes in order to accommodate eicosanoid synthesis and reactive oxygen species stress. These results were confirmed with independent proteomic data. The construction and availability of iAT-PLT-636 should stimulate further data-driven, systems analysis of platelet metabolism towards the understanding of pathophysiological conditions including, but not strictly limited to, coagulopathies.
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spelling pubmed-39052792014-01-29 Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance Thomas, Alex Rahmanian, Sorena Bordbar, Aarash Palsson, Bernhard Ø. Jamshidi, Neema Sci Rep Article Recently there has not been a systematic, objective assessment of the metabolic capabilities of the human platelet. A manually curated, functionally tested, and validated biochemical reaction network of platelet metabolism, iAT-PLT-636, was reconstructed using 33 proteomic datasets and 354 literature references. The network contains enzymes mapping to 403 diseases and 231 FDA approved drugs, alluding to an expansive scope of biochemical transformations that may affect or be affected by disease processes in multiple organ systems. The effect of aspirin (ASA) resistance on platelet metabolism was evaluated using constraint-based modeling, which revealed a redirection of glycolytic, fatty acid, and nucleotide metabolism reaction fluxes in order to accommodate eicosanoid synthesis and reactive oxygen species stress. These results were confirmed with independent proteomic data. The construction and availability of iAT-PLT-636 should stimulate further data-driven, systems analysis of platelet metabolism towards the understanding of pathophysiological conditions including, but not strictly limited to, coagulopathies. Nature Publishing Group 2014-01-29 /pmc/articles/PMC3905279/ /pubmed/24473230 http://dx.doi.org/10.1038/srep03925 Text en Copyright © 2014, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Article
Thomas, Alex
Rahmanian, Sorena
Bordbar, Aarash
Palsson, Bernhard Ø.
Jamshidi, Neema
Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title_full Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title_fullStr Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title_full_unstemmed Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title_short Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
title_sort network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3905279/
https://www.ncbi.nlm.nih.gov/pubmed/24473230
http://dx.doi.org/10.1038/srep03925
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