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Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody

The engineering of catalytic function in antibodies requires precise information on their structure. Here, results are presented that show how the antibody domain structure affects its functionality. The previously designed organophos­phate-metabolizing reactibody A17 has been re-engineered by repla...

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Autores principales: Ponomarenko, Natalia, Chatziefthimiou, Spyros D., Kurkova, Inna, Mokrushina, Yuliana, Stepanova, Anastasiya, Smirnov, Ivan, Avakyan, Marat, Bobik, Tatyana, Mamedov, Azad, Mitkevich, Vladimir, Belogurov, Alexey, Fedorova, Olga S., Dubina, Michael, Golovin, Andrey, Lamzin, Victor, Friboulet, Alain, Makarov, Alexander A., Wilmanns, Matthias, Gabibov, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949517/
https://www.ncbi.nlm.nih.gov/pubmed/24598740
http://dx.doi.org/10.1107/S1399004713032446
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author Ponomarenko, Natalia
Chatziefthimiou, Spyros D.
Kurkova, Inna
Mokrushina, Yuliana
Mokrushina, Yuliana
Stepanova, Anastasiya
Smirnov, Ivan
Avakyan, Marat
Bobik, Tatyana
Mamedov, Azad
Mitkevich, Vladimir
Belogurov, Alexey
Fedorova, Olga S.
Dubina, Michael
Golovin, Andrey
Lamzin, Victor
Friboulet, Alain
Makarov, Alexander A.
Wilmanns, Matthias
Gabibov, Alexander
author_facet Ponomarenko, Natalia
Chatziefthimiou, Spyros D.
Kurkova, Inna
Mokrushina, Yuliana
Mokrushina, Yuliana
Stepanova, Anastasiya
Smirnov, Ivan
Avakyan, Marat
Bobik, Tatyana
Mamedov, Azad
Mitkevich, Vladimir
Belogurov, Alexey
Fedorova, Olga S.
Dubina, Michael
Golovin, Andrey
Lamzin, Victor
Friboulet, Alain
Makarov, Alexander A.
Wilmanns, Matthias
Gabibov, Alexander
author_sort Ponomarenko, Natalia
collection PubMed
description The engineering of catalytic function in antibodies requires precise information on their structure. Here, results are presented that show how the antibody domain structure affects its functionality. The previously designed organophos­phate-metabolizing reactibody A17 has been re-engineered by replacing its constant κ light chain by the λ chain (A17λ), and the X-ray structure of A17λ has been determined at 1.95 Å resolution. It was found that compared with A17κ the active centre of A17λ is displaced, stabilized and made more rigid owing to interdomain interactions involving the CDR loops from the V(L) and V(H) domains. These V(L)/V(H) domains also have lower mobility, as deduced from the atomic displacement parameters of the crystal structure. The antibody elbow angle is decreased to 126° compared with 138° in A17κ. These structural differences account for the subtle changes in catalytic efficiency and thermodynamic parameters determined with two organophosphate ligands, as well as in the affinity for peptide substrates selected from a combinatorial cyclic peptide library, between the A17κ and A17λ variants. The data presented will be of interest and relevance to researchers dealing with the design of antibodies with tailor-made functions.
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spelling pubmed-39495172014-03-12 Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody Ponomarenko, Natalia Chatziefthimiou, Spyros D. Kurkova, Inna Mokrushina, Yuliana Mokrushina, Yuliana Stepanova, Anastasiya Smirnov, Ivan Avakyan, Marat Bobik, Tatyana Mamedov, Azad Mitkevich, Vladimir Belogurov, Alexey Fedorova, Olga S. Dubina, Michael Golovin, Andrey Lamzin, Victor Friboulet, Alain Makarov, Alexander A. Wilmanns, Matthias Gabibov, Alexander Acta Crystallogr D Biol Crystallogr Research Papers The engineering of catalytic function in antibodies requires precise information on their structure. Here, results are presented that show how the antibody domain structure affects its functionality. The previously designed organophos­phate-metabolizing reactibody A17 has been re-engineered by replacing its constant κ light chain by the λ chain (A17λ), and the X-ray structure of A17λ has been determined at 1.95 Å resolution. It was found that compared with A17κ the active centre of A17λ is displaced, stabilized and made more rigid owing to interdomain interactions involving the CDR loops from the V(L) and V(H) domains. These V(L)/V(H) domains also have lower mobility, as deduced from the atomic displacement parameters of the crystal structure. The antibody elbow angle is decreased to 126° compared with 138° in A17κ. These structural differences account for the subtle changes in catalytic efficiency and thermodynamic parameters determined with two organophosphate ligands, as well as in the affinity for peptide substrates selected from a combinatorial cyclic peptide library, between the A17κ and A17λ variants. The data presented will be of interest and relevance to researchers dealing with the design of antibodies with tailor-made functions. International Union of Crystallography 2014-02-15 /pmc/articles/PMC3949517/ /pubmed/24598740 http://dx.doi.org/10.1107/S1399004713032446 Text en © Ponomarenko et al. 2014 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Ponomarenko, Natalia
Chatziefthimiou, Spyros D.
Kurkova, Inna
Mokrushina, Yuliana
Mokrushina, Yuliana
Stepanova, Anastasiya
Smirnov, Ivan
Avakyan, Marat
Bobik, Tatyana
Mamedov, Azad
Mitkevich, Vladimir
Belogurov, Alexey
Fedorova, Olga S.
Dubina, Michael
Golovin, Andrey
Lamzin, Victor
Friboulet, Alain
Makarov, Alexander A.
Wilmanns, Matthias
Gabibov, Alexander
Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title_full Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title_fullStr Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title_full_unstemmed Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title_short Role of κ→λ light-chain constant-domain switch in the structure and functionality of A17 reactibody
title_sort role of κ→λ light-chain constant-domain switch in the structure and functionality of a17 reactibody
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3949517/
https://www.ncbi.nlm.nih.gov/pubmed/24598740
http://dx.doi.org/10.1107/S1399004713032446
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