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“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files

BACKGROUND: Of the different bioinformatic methods used to recover transposable elements (TEs) in genome sequences, one of the most commonly used procedures is the homology-based method proposed by the RepeatMasker program. RepeatMasker generates several output files, including the .out file, which...

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Detalles Bibliográficos
Autores principales: Bailly-Bechet, Marc, Haudry, Annabelle, Lerat, Emmanuelle
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4021974/
http://dx.doi.org/10.1186/1759-8753-5-13