Cargando…

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

Unbiased high-throughput sequencing of whole metagenome shotgun DNA libraries is a promising new approach to identifying microbes in clinical specimens, which, unlike other techniques, is not limited to known sequences. Unlike most sequencing applications, it is highly sensitive to laboratory contam...

Descripción completa

Detalles Bibliográficos
Autores principales:	Laurence, Martin, Hatzis, Christos, Brash, Douglas E.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4023998/ https://www.ncbi.nlm.nih.gov/pubmed/24837716 http://dx.doi.org/10.1371/journal.pone.0097876

Ejemplares similares

Absolute quantification of viable bacteria abundances in food by next-generation sequencing: Quantitative NGS of viable microbes
por: Kallastu, Aili, et al.
Publicado: (2023)

1201. Sarcoidosis Candidate Microbes Identified by Next Generation Sequencing
por: Kriesel, John D, et al.
Publicado: (2020)

Analysis of plant microbe interactions in the era of next generation sequencing technologies
por: Knief, Claudia
Publicado: (2014)

Detection of Pathogenic Microbe Composition Using Next-Generation Sequencing Data
por: Zhao, Haiyong, et al.
Publicado: (2020)

Multilaboratory assessment of metagenomic next-generation sequencing for unbiased microbe detection
por: Han, Dongsheng, et al.
Publicado: (2021)

Discrete False-Discovery Rate Improves Identification of Differentially Abundant Microbes
por: Jiang, Lingjing, et al.
Publicado: (2017)

Engineering microbes for tolerance to next-generation biofuels
por: Dunlop, Mary J
Publicado: (2011)

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing
por: Liu, Yu, et al.
Publicado: (2014)

Propionibacterium acnes: Disease-Causing Agent or Common Contaminant? Detection in Diverse Patient Samples by Next-Generation Sequencing
por: Mollerup, Sarah, et al.
Publicado: (2016)

Next Generation Sequencing Technologies for Insect Virus Discovery
por: Liu, Sijun, et al.
Publicado: (2011)

Next Generation Sequencing: Potential and Application in Drug Discovery
por: Yadav, Navneet Kumar, et al.
Publicado: (2014)

A next-generation beneficial microbe: Akkermansia muciniphila
por: Naito, Yuji, et al.
Publicado: (2018)

Next-Generation Beneficial Microbes: The Case of Akkermansia muciniphila
por: Cani, Patrice D., et al.
Publicado: (2017)

A genome-wide approach to link genotype to clinical outcome by utilizing next generation sequencing and gene chip data of 6,697 breast cancer patients
por: Pongor, Lőrinc, et al.
Publicado: (2015)

Application of next generation sequencing technology on contamination monitoring in microbiology laboratory
por: Xiao, Yan, et al.
Publicado: (2019)

SNP discovery in apple cultivars using next generation sequencing
por: Alencar, Sérgio, et al.
Publicado: (2011)

SNP Discovery through Next-Generation Sequencing and Its Applications
por: Kumar, Santosh, et al.
Publicado: (2012)

Next Generation Sequencing of Actinobacteria for the Discovery of Novel Natural Products
por: Gomez-Escribano, Juan Pablo, et al.
Publicado: (2016)

Erratum to “Next Generation Sequencing: Potential and Application in Drug Discovery”
por: Yadav, Navneet Kumar, et al.
Publicado: (2014)

Retracted: Next Generation Sequencing: Potential and Application in Drug Discovery
por: The Scientific World Journal,
Publicado: (2020)

Microbial Contamination in Next Generation Sequencing: Implications for Sequence-Based Analysis of Clinical Samples
por: Strong, Michael J., et al.
Publicado: (2014)

Advancing Microbe Detection for Lower Respiratory Tract Infection Diagnosis and Management with Metagenomic Next-Generation Sequencing
por: Dong, Yulan, et al.
Publicado: (2023)

Effect of Next-Generation Exome Sequencing Depth for Discovery of Diagnostic Variants
por: Kim, Kyung, et al.
Publicado: (2015)

Discovery of rare variants implicated in schizophrenia using next-generation sequencing
por: Rhoades, Raina, et al.
Publicado: (2019)

Multi-genome alignment for quality control and contamination screening of next-generation sequencing data
por: Hadfield, James, et al.
Publicado: (2014)

Discovery and characterization of medaka miRNA genes by next generation sequencing platform
por: Li, Sung-Chou, et al.
Publicado: (2010)

Discovery and Validation of Barrett's Esophagus MicroRNA Transcriptome by Next Generation Sequencing
por: Bansal, Ajay, et al.
Publicado: (2013)

Variant mapping and mutation discovery in inbred mice using next-generation sequencing
por: Gallego-Llamas, Jabier, et al.
Publicado: (2015)

Next-Generation Sequencing for Porcine Coronaviruses
por: Marthaler, Douglas, et al.
Publicado: (2015)

Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes
por: Close, Devin W, et al.
Publicado: (2013)

A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing
por: Daly, Gordon M., et al.
Publicado: (2011)

Editorial: Marine Microbes for Contaminant Bioremediation
por: Zhang, Xuwang, et al.
Publicado: (2021)

Disease vectors in the era of next generation sequencing
por: Rinker, David C., et al.
Publicado: (2016)

Mutation based treatment recommendations from next generation sequencing data: a comparison of web tools
por: Patel, Jaymin M., et al.
Publicado: (2016)

Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate
por: Buschmann, Tilo, et al.
Publicado: (2014)

Stochastic neutral modelling of the Gut Microbiota’s relative species abundance from next generation sequencing data
por: Sala, Claudia, et al.
Publicado: (2016)

Generation of expressed sequence tags for discovery of genes responsible for floral traits of Chrysanthemum morifolium by next-generation sequencing technology
por: Sasaki, Katsutomo, et al.
Publicado: (2017)

Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome
por: Wang, Yajun, et al.
Publicado: (2012)

Metagenomes from 25 Low-Abundance Microbes in a Partial Nitritation Anammox Microbiome
por: Beach, Natalie K., et al.
Publicado: (2022)

Next-generation sequencing of common osteogenesis imperfecta-related genes in clinical practice
por: Árvai, Kristóf, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_5gk19k7vu5m8ve385oltk9qamt