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Integrated analysis of recurrent properties of cancer genes to identify novel drivers
The heterogeneity of cancer genomes in terms of acquired mutations complicates the identification of genes whose modification may exert a driver role in tumorigenesis. In this study, we present a novel method that integrates expression profiles, mutation effects, and systemic properties of mutated g...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054099/ https://www.ncbi.nlm.nih.gov/pubmed/23718799 http://dx.doi.org/10.1186/gb-2013-14-5-r52 |
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author | D'Antonio, Matteo Ciccarelli, Francesca D |
author_facet | D'Antonio, Matteo Ciccarelli, Francesca D |
author_sort | D'Antonio, Matteo |
collection | PubMed |
description | The heterogeneity of cancer genomes in terms of acquired mutations complicates the identification of genes whose modification may exert a driver role in tumorigenesis. In this study, we present a novel method that integrates expression profiles, mutation effects, and systemic properties of mutated genes to identify novel cancer drivers. We applied our method to ovarian cancer samples and were able to identify putative drivers in the majority of carcinomas without mutations in known cancer genes, thus suggesting that it can be used as a complementary approach to find rare driver mutations that cannot be detected using frequency-based approaches. |
format | Online Article Text |
id | pubmed-4054099 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-40540992014-06-13 Integrated analysis of recurrent properties of cancer genes to identify novel drivers D'Antonio, Matteo Ciccarelli, Francesca D Genome Biol Method The heterogeneity of cancer genomes in terms of acquired mutations complicates the identification of genes whose modification may exert a driver role in tumorigenesis. In this study, we present a novel method that integrates expression profiles, mutation effects, and systemic properties of mutated genes to identify novel cancer drivers. We applied our method to ovarian cancer samples and were able to identify putative drivers in the majority of carcinomas without mutations in known cancer genes, thus suggesting that it can be used as a complementary approach to find rare driver mutations that cannot be detected using frequency-based approaches. BioMed Central 2013 2013-05-29 /pmc/articles/PMC4054099/ /pubmed/23718799 http://dx.doi.org/10.1186/gb-2013-14-5-r52 Text en Copyright © 2013 D'Antonio and Ciccarelli.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Method D'Antonio, Matteo Ciccarelli, Francesca D Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title | Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title_full | Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title_fullStr | Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title_full_unstemmed | Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title_short | Integrated analysis of recurrent properties of cancer genes to identify novel drivers |
title_sort | integrated analysis of recurrent properties of cancer genes to identify novel drivers |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4054099/ https://www.ncbi.nlm.nih.gov/pubmed/23718799 http://dx.doi.org/10.1186/gb-2013-14-5-r52 |
work_keys_str_mv | AT dantoniomatteo integratedanalysisofrecurrentpropertiesofcancergenestoidentifynoveldrivers AT ciccarellifrancescad integratedanalysisofrecurrentpropertiesofcancergenestoidentifynoveldrivers |