Cargando…

HIV-1 DIS stem loop forms an obligatory bent kissing intermediate in the dimerization pathway

The HIV-1 dimerization initiation sequence (DIS) is a conserved palindrome in the apical loop of a conserved hairpin motif in the 5′-untranslated region of its RNA genome. DIS hairpin plays an important role in genome dimerization by forming a ‘kissing complex’ between two complementary hairpins. Un...

Descripción completa

Detalles Bibliográficos
Autores principales:	Mundigala, Hansini, Michaux, Jonathan B., Feig, Andrew L., Ennifar, Eric, Rueda, David
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	RNA
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4066764/ https://www.ncbi.nlm.nih.gov/pubmed/24813449 http://dx.doi.org/10.1093/nar/gku332

Ejemplares similares

Aminoglycoside binding to the HIV-1 RNA dimerization initiation site: thermodynamics and effect on the kissing-loop to duplex conversion
por: Bernacchi, Serena, et al.
Publicado: (2007)

Rational engineering of the Neurospora VS ribozyme to allow substrate recognition via different kissing-loop interactions
por: Lacroix-Labonté, Julie, et al.
Publicado: (2016)

Conformations of Flanking Bases in HIV-1 RNA DIS Kissing Complexes Studied by Molecular Dynamics
por: Réblová, Kamila, et al.
Publicado: (2007)

Multiple myeloma-associated hDIS3 mutations cause perturbations in cellular RNA metabolism and suggest hDIS3 PIN domain as a potential drug target
por: Tomecki, Rafal, et al.
Publicado: (2014)

End Binding Proteins Are Obligatory Dimers
por: Sen, Indrani, et al.
Publicado: (2013)

Predicting kissing interactions in microRNA–target complex and assessment of microRNA activity
por: Cao, Song, et al.
Publicado: (2012)

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA
por: Purzycka, Katarzyna J., et al.
Publicado: (2011)

Highly conserved s2m element of SARS-CoV-2 dimerizes via a kissing complex and interacts with host miRNA-1307-3p
por: Imperatore, Joshua A, et al.
Publicado: (2021)

The relationship between HIV-1 genome RNA dimerization, virion maturation and infectivity†
por: Ohishi, Masahisa, et al.
Publicado: (2011)

Molecular determinants of HIV-1 NCp7 chaperone activity in maturation of the HIV-1 dimerization initiation site
por: Aduri, Raviprasad, et al.
Publicado: (2013)

Kissing-loop interaction between 5′ and 3′ ends of tick-borne Langat virus genome ‘bridges the gap’ between mosquito- and tick-borne flaviviruses in mechanisms of viral RNA cyclization: applications for virus attenuation and vaccine development
por: Tsetsarkin, Konstantin A., et al.
Publicado: (2016)

Imaging HIV-1 RNA dimerization in cells by multicolor super-resolution and fluctuation microscopies
por: Ferrer, Mireia, et al.
Publicado: (2016)

The RNA exosome complex central channel controls both exonuclease and endonuclease Dis3 activities in vivo and in vitro
por: Drążkowska, Karolina, et al.
Publicado: (2013)

The HIV-2 Rev-response element: determining secondary structure and defining folding intermediates
por: Lusvarghi, Sabrina, et al.
Publicado: (2013)

The conserved 3′X terminal domain of hepatitis C virus genomic RNA forms a two-stem structure that promotes viral RNA dimerization
por: Cantero-Camacho, Ángel, et al.
Publicado: (2015)

Vif is a RNA chaperone that could temporally regulate RNA dimerization and the early steps of HIV-1 reverse transcription
por: Henriet, S., et al.
Publicado: (2007)

The ribonuclease DIS3 promotes let-7 miRNA maturation by degrading the pluripotency factor LIN28B mRNA
por: Segalla, Simona, et al.
Publicado: (2015)

Perlman syndrome nuclease DIS3L2 controls cytoplasmic non-coding RNAs and provides surveillance pathway for maturing snRNAs
por: Łabno, Anna, et al.
Publicado: (2016)

Additional roles of a peripheral loop–loop interaction in the Neurospora VS ribozyme
por: DeAbreu, Diane M., et al.
Publicado: (2011)

Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling
por: Schudoma, Christian, et al.
Publicado: (2010)

Cation-dependent cleavage of the duplex form of the subtype-B HIV-1 RNA dimerization initiation site
por: Ennifar, Eric, et al.
Publicado: (2010)

Loop-miRs: active microRNAs generated from single-stranded loop regions
por: Winter, Julia, et al.
Publicado: (2013)

RNA dimerization plays a role in ribosomal frameshifting of the SARS coronavirus
por: Ishimaru, Daniella, et al.
Publicado: (2013)

DIS3L2 and LSm proteins are involved in the surveillance of Sm ring-deficient snRNAs
por: Roithová, Adriana, et al.
Publicado: (2020)

Structure-Function Model for Kissing Loop Interactions That Initiate Dimerization of Ty1 RNA
por: Gamache, Eric R., et al.
Publicado: (2017)

Attenuation of loop-receptor interactions with pseudoknot formation
por: Afonin, Kirill A., et al.
Publicado: (2012)

Structure–function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop–loop interaction motif conserved in most natural hammerheads
por: Dufour, David, et al.
Publicado: (2009)

Requirement of upstream Hfq-binding (ARN)(x) elements in glmS and the Hfq C-terminal region for GlmS upregulation by sRNAs GlmZ and GlmY(†)
por: Salim, Nilshad N., et al.
Publicado: (2012)

Manipulation of P-TEFb control machinery by HIV: recruitment of P-TEFb from the large form by Tat and binding of HEXIM1 to TAR
por: Sedore, Stanley C., et al.
Publicado: (2007)

Probing the structural hierarchy and energy landscape of an RNA T-loop hairpin
por: Zhuang, Zhuoyun, et al.
Publicado: (2007)

The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression
por: Wang, Yunfei, et al.
Publicado: (2011)

Cryo-EM structures of the late-stage assembly intermediates of the bacterial 50S ribosomal subunit
por: Li, Ningning, et al.
Publicado: (2013)

The terminal loop region controls microRNA processing by Drosha and Dicer
por: Zhang, Xiaoxiao, et al.
Publicado: (2010)

SHAPE analysis of the FIV Leader RNA reveals a structural switch potentially controlling viral packaging and genome dimerization
por: Kenyon, Julia C., et al.
Publicado: (2011)

MPP6 stimulates both RRP6 and DIS3 to degrade a specified subset of MTR4-sensitive substrates in the human nucleus
por: Fujiwara, Naoko, et al.
Publicado: (2022)

A novel role for gag as a cis-acting element regulating RNA structure, dimerization and packaging in HIV-1 lentiviral vectors
por: Vamva, Eirini, et al.
Publicado: (2021)

METTL15 interacts with the assembly intermediate of murine mitochondrial small ribosomal subunit to form m(4)C840 12S rRNA residue
por: Laptev, Ivan, et al.
Publicado: (2020)

Controlled interplay between trigger loop and Gre factor in the RNA polymerase active centre
por: Roghanian, Mohammad, et al.
Publicado: (2011)

Stem–loop structures can effectively substitute for an RNA pseudoknot in −1 ribosomal frameshifting
por: Yu, Chien-Hung, et al.
Publicado: (2011)

LOOP IIId of the HCV IRES is essential for the structural rearrangement of the 40S-HCV IRES complex
por: Angulo, Jenniffer, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_7u3s210nmdfljak084s4usslup