These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure

K-mer abundance analysis is widely used for many purposes in nucleotide sequence analysis, including data preprocessing for de novo assembly, repeat detection, and sequencing coverage estimation. We present the khmer software package for fast and memory efficient online counting of k-mers in sequenc...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Qingpeng, Pell, Jason, Canino-Koning, Rosangela, Howe, Adina Chuang, Brown, C. Titus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111482/
https://www.ncbi.nlm.nih.gov/pubmed/25062443
http://dx.doi.org/10.1371/journal.pone.0101271

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4111482/
https://www.ncbi.nlm.nih.gov/pubmed/25062443
http://dx.doi.org/10.1371/journal.pone.0101271

Ejemplares similares