Cargando…

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation

The human genome is segmented into topologically associating domains (TADs), but the role of this conserved organization during transient changes in gene expression is not known. Here we describe the distribution of progestin-induced chromatin modifications and changes in transcriptional activity ov...

Descripción completa

Detalles Bibliográficos
Autores principales:	Le Dily, François, Baù, Davide, Pohl, Andy, Vicent, Guillermo P., Serra, François, Soronellas, Daniel, Castellano, Giancarlo, Wright, Roni H.G., Ballare, Cecilia, Filion, Guillaume, Marti-Renom, Marc A., Beato, Miguel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Cold Spring Harbor Laboratory Press 2014
Materias:	Research Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180976/ https://www.ncbi.nlm.nih.gov/pubmed/25274727 http://dx.doi.org/10.1101/gad.241422.114

Ejemplares similares

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors
por: Serra, François, et al.
Publicado: (2017)

Parallel sequencing lives, or what makes large sequencing projects successful
por: Quilez, Javier, et al.
Publicado: (2017)

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming
por: Stadhouders, Ralph, et al.
Publicado: (2018)

Identification of chromatin loops from Hi-C interaction matrices by CTCF–CTCF topology classification
por: Galan, Silvia, et al.
Publicado: (2022)

OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes
por: Vidal, Enrique, et al.
Publicado: (2018)

Erk signaling and chromatin remodeling in MMTV promoter activation by progestins
por: Vicent, Guillermo P., et al.
Publicado: (2009)

Progesterone receptor induces bcl-x expression through intragenic binding sites favoring RNA polymerase II elongation
por: Bertucci, Paola Y., et al.
Publicado: (2013)

Relationship between nucleosome positioning and progesterone-induced alternative splicing in breast cancer cells
por: Iannone, Camilla, et al.
Publicado: (2015)

Chromatin topology defines estradiol-primed progesterone receptor and PAX2 binding in endometrial cancer cells
por: La Greca, Alejandro, et al.
Publicado: (2022)

Two Chromatin Remodeling Activities Cooperate during Activation of Hormone Responsive Promoters
por: Vicent, Guillermo Pablo, et al.
Publicado: (2009)

90 YEARS OF PROGESTERONE: Molecular mechanisms of progesterone receptor action on the breast cancer genome
por: Beato, Miguel, et al.
Publicado: (2020)

The Chromatin Remodeler CHD8 Is Required for Activation of Progesterone Receptor-Dependent Enhancers
por: Ceballos-Chávez, María, et al.
Publicado: (2015)

Coordinated changes in gene expression, H1 variant distribution and genome 3D conformation in response to H1 depletion
por: Serna-Pujol, Núria, et al.
Publicado: (2022)

Unliganded Progesterone Receptor Governs Estrogen Receptor Gene Expression by Regulating DNA Methylation in Breast Cancer Cells
por: Verde, Gaetano, et al.
Publicado: (2018)

Signaling by Steroid Hormones in the 3D Nuclear Space
por: Le Dily, François, et al.
Publicado: (2018)

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains
por: Trussart, Marie, et al.
Publicado: (2015)

Rapid reversible changes in compartments and local chromatin organization revealed by hyperosmotic shock
por: Amat, Ramon, et al.
Publicado: (2019)

Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology
por: Zhang, Nan, et al.
Publicado: (2020)

Transcriptional activation during cell reprogramming correlates with the formation of 3D open chromatin hubs
por: Di Stefano, Marco, et al.
Publicado: (2020)

Hormone-control regions mediate steroid receptor–dependent genome organization
por: Le Dily, François, et al.
Publicado: (2019)

In vivo temporal resolution of acute promyelocytic leukemia progression reveals a role of Klf4 in suppressing early leukemic transformation
por: Mas, Glòria, et al.
Publicado: (2022)

PARty promoters: Hormone-dependent gene regulation requires CDK2 activation of PARP1
por: Wright, Roni H.G., et al.
Publicado: (2012)

Theoretical principles of transcription factor traffic on folded chromatin
por: Cortini, Ruggero, et al.
Publicado: (2018)

A set of accessible enhancers enables the initial response of breast cancer cells to physiological progestin concentrations
por: Zaurin, Roser, et al.
Publicado: (2021)

Hierarchical chromatin organization detected by TADpole
por: Soler-Vila, Paula, et al.
Publicado: (2020)

CDC2 Mediates Progestin Initiated Endometrial Stromal Cell Proliferation: A PR Signaling to Gene Expression Independently of Its Binding to Chromatin
por: Vallejo, Griselda, et al.
Publicado: (2014)

Enhancer-driven 3D chromatin domain folding modulates transcription in human mammary tumor cells
por: Kocanova, Silvia, et al.
Publicado: (2023)

Distinct roles of cohesin-SA1 and cohesin-SA2 in 3D chromosome organization
por: Kojic, Aleksandar, et al.
Publicado: (2018)

STAG2 loss-of-function affects short-range genomic contacts and modulates the basal-luminal transcriptional program of bladder cancer cells
por: Richart, Laia, et al.
Publicado: (2021)

Identification of alternative topological domains in chromatin
por: Filippova, Darya, et al.
Publicado: (2014)

bwtool: a tool for bigWig files
por: Pohl, Andy, et al.
Publicado: (2014)

CHESS enables quantitative comparison of chromatin contact data and automatic feature extraction
por: Galan, Silvia, et al.
Publicado: (2020)

MyoD induces ARTD1 and nucleoplasmic poly-ADP-ribosylation during fibroblast to myoblast transdifferentiation
por: Bisceglie, Lavinia, et al.
Publicado: (2021)

Distinct IL‐1α‐responsive enhancers promote acute and coordinated changes in chromatin topology in a hierarchical manner
por: Weiterer, Sinah‐Sophia, et al.
Publicado: (2019)

Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data
por: Althammer, Sonja, et al.
Publicado: (2011)

Mating type specific chromosome conformation in Saccharomyces cerevisiae
por: Belton, Jon-Matthew, et al.
Publicado: (2013)

DNA topology in chromatin is defined by nucleosome spacing
por: Nikitina, Tatiana, et al.
Publicado: (2017)

Topological structure analysis of chromatin interaction networks
por: Viksna, Juris, et al.
Publicado: (2019)

Topological polymorphism of nucleosome fibers and folding of chromatin
por: Zhurkin, Victor B., et al.
Publicado: (2021)

Mechanical determinants of chromatin topology and gene expression
por: Jha, Rajiv Kumar, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_p3qhgo4aori1g5cls15bcdbeph