Cargando…

Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples

Reverse transcription quantitative PCR is an established, simple and effective method for RNA measurement. However, technical standardisation challenges combined with frequent insufficient experimental detail render replication of many published findings challenging. Consequently, without adequate c...

Descripción completa

Detalles Bibliográficos
Autores principales: Sanders, Rebecca, Mason, Deborah J., Foy, Carole A., Huggett, Jim F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182594/
https://www.ncbi.nlm.nih.gov/pubmed/24858468
http://dx.doi.org/10.1007/s00216-014-7857-x
_version_ 1782337563219984384
author Sanders, Rebecca
Mason, Deborah J.
Foy, Carole A.
Huggett, Jim F.
author_facet Sanders, Rebecca
Mason, Deborah J.
Foy, Carole A.
Huggett, Jim F.
author_sort Sanders, Rebecca
collection PubMed
description Reverse transcription quantitative PCR is an established, simple and effective method for RNA measurement. However, technical standardisation challenges combined with frequent insufficient experimental detail render replication of many published findings challenging. Consequently, without adequate consideration of experimental standardisation, such findings may be sufficient for a given publication but cannot be translated to wider clinical application. This article builds on earlier standardisation work and the MIQE guidelines, discussing processes that need consideration for accurate, reproducible analysis when dealing with patient samples. By applying considerations common to the science of measurement (metrology), one can maximise the impact of gene expression studies, increasing the likelihood of their translation to clinical tools. [Figure: see text]
format Online
Article
Text
id pubmed-4182594
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-41825942014-10-06 Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples Sanders, Rebecca Mason, Deborah J. Foy, Carole A. Huggett, Jim F. Anal Bioanal Chem Review Reverse transcription quantitative PCR is an established, simple and effective method for RNA measurement. However, technical standardisation challenges combined with frequent insufficient experimental detail render replication of many published findings challenging. Consequently, without adequate consideration of experimental standardisation, such findings may be sufficient for a given publication but cannot be translated to wider clinical application. This article builds on earlier standardisation work and the MIQE guidelines, discussing processes that need consideration for accurate, reproducible analysis when dealing with patient samples. By applying considerations common to the science of measurement (metrology), one can maximise the impact of gene expression studies, increasing the likelihood of their translation to clinical tools. [Figure: see text] Springer Berlin Heidelberg 2014-05-25 2014 /pmc/articles/PMC4182594/ /pubmed/24858468 http://dx.doi.org/10.1007/s00216-014-7857-x Text en © The Author(s) 2014 https://creativecommons.org/licenses/by/4.0/ Open Access This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Review
Sanders, Rebecca
Mason, Deborah J.
Foy, Carole A.
Huggett, Jim F.
Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title_full Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title_fullStr Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title_full_unstemmed Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title_short Considerations for accurate gene expression measurement by reverse transcription quantitative PCR when analysing clinical samples
title_sort considerations for accurate gene expression measurement by reverse transcription quantitative pcr when analysing clinical samples
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4182594/
https://www.ncbi.nlm.nih.gov/pubmed/24858468
http://dx.doi.org/10.1007/s00216-014-7857-x
work_keys_str_mv AT sandersrebecca considerationsforaccurategeneexpressionmeasurementbyreversetranscriptionquantitativepcrwhenanalysingclinicalsamples
AT masondeborahj considerationsforaccurategeneexpressionmeasurementbyreversetranscriptionquantitativepcrwhenanalysingclinicalsamples
AT foycarolea considerationsforaccurategeneexpressionmeasurementbyreversetranscriptionquantitativepcrwhenanalysingclinicalsamples
AT huggettjimf considerationsforaccurategeneexpressionmeasurementbyreversetranscriptionquantitativepcrwhenanalysingclinicalsamples