Massively parallel read mapping on GPUs with the q-group index and PEANUT

We present the q-group index, a novel data structure for read mapping tailored towards graphics processing units (GPUs) with a small memory footprint and efficient parallel algorithms for querying and building. On top of the q-group index we introduce PEANUT, a highly parallel GPU-based read mapper....

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Detalles Bibliográficos
Autores principales: Köster, Johannes, Rahmann, Sven
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2014
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184027/
https://www.ncbi.nlm.nih.gov/pubmed/25289191
http://dx.doi.org/10.7717/peerj.606

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184027/
https://www.ncbi.nlm.nih.gov/pubmed/25289191
http://dx.doi.org/10.7717/peerj.606

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