Detailed comparison of two popular variant calling packages for exome and targeted exon studies

The Genome Analysis Toolkit (GATK) is commonly used for variant calling of single nucleotide polymorphisms (SNPs) and small insertions and deletions (indels) from short-read sequencing data aligned against a reference genome. There have been a number of variant calling comparisons against GATK, but...

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Detalles Bibliográficos
Autores principales: Warden, Charles D., Adamson, Aaron W., Neuhausen, Susan L., Wu, Xiwei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2014
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184249/
https://www.ncbi.nlm.nih.gov/pubmed/25289185
http://dx.doi.org/10.7717/peerj.600

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184249/
https://www.ncbi.nlm.nih.gov/pubmed/25289185
http://dx.doi.org/10.7717/peerj.600

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