Cargando…

Methylated DNA is over-represented in whole-genome bisulfite sequencing data

The development of whole-genome bisulfite sequencing (WGBS) has resulted in a number of exciting discoveries about the role of DNA methylation leading to a plethora of novel testable hypotheses. Methods for constructing sodium bisulfite-converted and amplified libraries have recently advanced to the...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ji, Lexiang, Sasaki, Takahiko, Sun, Xiaoxiao, Ma, Ping, Lewis, Zachary A., Schmitz, Robert J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2014
Materias:	Genetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204604/ https://www.ncbi.nlm.nih.gov/pubmed/25374580 http://dx.doi.org/10.3389/fgene.2014.00341

Ejemplares similares

Analysis of DNA Methylation Profiles in Mandibular Condyle of Chicks With Crossed Beaks Using Whole-Genome Bisulfite Sequencing
por: Shi, Lei, et al.
Publicado: (2021)

Whole genome bisulfite sequencing reveals DNA methylation roles in the adaptive response of wildness training giant pandas to wild environment
por: Jie, Xiaodie, et al.
Publicado: (2022)

Exploring genome wide bisulfite sequencing for DNA methylation analysis in livestock: a technical assessment
por: Doherty, Rachael, et al.
Publicado: (2014)

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution
por: Garrett-Bakelman, Francine E., et al.
Publicado: (2015)

Investigation of Gene Expression and DNA Methylation From Seven Different Brain Regions of a Crab-Eating Monkey as Determined by RNA-Seq and Whole-Genome Bisulfite Sequencing
por: Lim, Won-Jun, et al.
Publicado: (2019)

Development of a Method to Implement Whole-Genome Bisulfite Sequencing of cfDNA from Cancer Patients and a Mouse Tumor Model
por: Maggi, Elaine C., et al.
Publicado: (2018)

Characterization of HPV DNA methylation of contiguous CpG sites by bisulfite treatment and massively parallel sequencing—the FRAGMENT approach
por: Sun, Chang, et al.
Publicado: (2014)

Benchmarking DNA methylation analysis of 14 alignment algorithms for whole genome bisulfite sequencing in mammals
por: Gong, Wentao, et al.
Publicado: (2022)

Coverage recommendations for methylation analysis by whole genome bisulfite sequencing
por: Ziller, Michael J., et al.
Publicado: (2014)

Whole-genome resequencing and bisulfite sequencing provide new insights into the feeding habit domestication in mandarin fish (Siniperca chuatsi)
por: Li, Ling, et al.
Publicado: (2023)

Base-resolution detection of N(4)-methylcytosine in genomic DNA using 4mC-Tet-assisted-bisulfite- sequencing
por: Yu, Miao, et al.
Publicado: (2015)

Beadchip technology to detect DNA methylation in mouse faithfully recapitulates whole-genome bisulfite sequencing
por: Martin, Elizabeth M, et al.
Publicado: (2023)

Whole-genome bisulfite sequencing reveals the function of DNA methylation in the allotransplantation immunity of pearl oysters
por: Gu, Zefeng, et al.
Publicado: (2023)

Simultaneous Methylation-Level Assessment of Hundreds of CpG Sites by Targeted Bisulfite PCR Sequencing (TBPseq)
por: Jeon, Kyuheum, et al.
Publicado: (2017)

Histone H1 Limits DNA Methylation in Neurospora crassa
por: Seymour, Michael, et al.
Publicado: (2016)

Bisulfite-Converted DNA Quantity Evaluation: A Multiplex Quantitative Real-Time PCR System for Evaluation of Bisulfite Conversion
por: Hong, Sae Rom, et al.
Publicado: (2021)

Amplification-free whole-genome bisulfite sequencing by post-bisulfite adaptor tagging
por: Miura, Fumihito, et al.
Publicado: (2012)

epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data
por: Vincent, Martin, et al.
Publicado: (2017)

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
por: Hansen, Kasper D, et al.
Publicado: (2012)

Identification of DNA-Methylated CpG Islands Associated With Gene Silencing in the Adult Body Tissues of the Ogye Chicken Using RNA-Seq and Reduced Representation Bisulfite Sequencing
por: Lim, Won-Jun, et al.
Publicado: (2019)

Anchor-based bisulfite sequencing determines genome-wide DNA methylation
por: Chapin, Nathaniel, et al.
Publicado: (2022)

BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues
por: Zou, Luli S., et al.
Publicado: (2018)

Analysis of DNA methylation profiles during sheep skeletal muscle development using whole-genome bisulfite sequencing
por: Fan, Yixuan, et al.
Publicado: (2020)

Genome-wide analysis of DNA Methylation profiles on sheep ovaries associated with prolificacy using whole-genome Bisulfite sequencing
por: Zhang, Yanli, et al.
Publicado: (2017)

The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa
por: Basenko, Evelina Y., et al.
Publicado: (2016)

Whole-Genome DNA Methylation Dynamics of Sheep Preimplantation Embryo Investigated by Single-Cell DNA Methylome Sequencing
por: Zhang, Zijing, et al.
Publicado: (2021)

Whole Genome Sequencing of Four Representatives From the Admixed Population of the United Arab Emirates
por: Daw Elbait, Gihan, et al.
Publicado: (2020)

Identification of differential genomic DNA Methylation in the hypothalamus of pubertal rat using reduced representation Bisulfite sequencing
por: Luo, Lei, et al.
Publicado: (2017)

BSMAP: whole genome bisulfite sequence MAPping program
por: Xi, Yuanxin, et al.
Publicado: (2009)

Whole-genome bisulfite sequencing with improved accuracy and cost
por: Suzuki, Masako, et al.
Publicado: (2018)

Comparison of whole-genome bisulfite sequencing library preparation strategies identifies sources of biases affecting DNA methylation data
por: Olova, Nelly, et al.
Publicado: (2018)

A comparison of existing global DNA methylation assays to low-coverage whole-genome bisulfite sequencing for epidemiological studies
por: Crary-Dooley, Florence K., et al.
Publicado: (2017)

A Bayesian Approach for Analysis of Whole-Genome Bisulfite Sequencing Data Identifies Disease-Associated Changes in DNA Methylation
por: Rackham, Owen J. L., et al.
Publicado: (2017)

Ultra-deep whole genome bisulfite sequencing reveals a single methylation hotspot in human brain mitochondrial DNA
por: Guitton, Romain, et al.
Publicado: (2022)

NGS-based deep bisulfite sequencing
por: Lee, Suman, et al.
Publicado: (2015)

DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight
por: Weisenberger, Daniel J., et al.
Publicado: (2008)

Detection of differentially methylated regions from whole-genome bisulfite sequencing data without replicates
por: Wu, Hao, et al.
Publicado: (2015)

Identification of cell type-specific methylation signals in bulk whole genome bisulfite sequencing data
por: Scott, C. Anthony, et al.
Publicado: (2020)

Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient
por: Heyn, Holger, et al.
Publicado: (2012)

MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data
por: Barturen, Guillermo, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_v91d8eevlpclkmhrc35crpafde