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Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease

How stage-specific enhancer dynamics modulate gene expression patterns essential for organ development, homesostasis, and disease is not well understood. Here, we addressed this question by mapping chromatin occupancy of GATA4—a master cardiac transcription factor—in heart development and disease. W...

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Detalles Bibliográficos
Autores principales: He, Aibin, Gu, Fei, Hu, Yong, Ma, Qing, Yi Ye, Lillian, Akiyama, Jennifer A., Visel, Axel, Pennacchio, Len A., Pu, William T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236193/
https://www.ncbi.nlm.nih.gov/pubmed/25249388
http://dx.doi.org/10.1038/ncomms5907
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author He, Aibin
Gu, Fei
Hu, Yong
Ma, Qing
Yi Ye, Lillian
Akiyama, Jennifer A.
Visel, Axel
Pennacchio, Len A.
Pu, William T.
author_facet He, Aibin
Gu, Fei
Hu, Yong
Ma, Qing
Yi Ye, Lillian
Akiyama, Jennifer A.
Visel, Axel
Pennacchio, Len A.
Pu, William T.
author_sort He, Aibin
collection PubMed
description How stage-specific enhancer dynamics modulate gene expression patterns essential for organ development, homesostasis, and disease is not well understood. Here, we addressed this question by mapping chromatin occupancy of GATA4—a master cardiac transcription factor—in heart development and disease. We find that GATA4 binds and participaes in establishing active chromatin regions by stimulating H3K27ac deposition, which facilitates GATA4-driven gene expression. GATA4 chromatin occupancy changes markedly between fetal and adult heart, with a limitted binding sites overlap. Cardiac stress restored GATA4 occupancy to a subset of fetal sites, but many stress-associated GATA4 binding sites localized to loci not occupied by GATA4 during normal heart development. Collectively, our data show that dynamic, context-specific transcription factors occupancy underlies stage-specific events in development, homeostasis, and disease.
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spelling pubmed-42361932015-03-24 Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease He, Aibin Gu, Fei Hu, Yong Ma, Qing Yi Ye, Lillian Akiyama, Jennifer A. Visel, Axel Pennacchio, Len A. Pu, William T. Nat Commun Article How stage-specific enhancer dynamics modulate gene expression patterns essential for organ development, homesostasis, and disease is not well understood. Here, we addressed this question by mapping chromatin occupancy of GATA4—a master cardiac transcription factor—in heart development and disease. We find that GATA4 binds and participaes in establishing active chromatin regions by stimulating H3K27ac deposition, which facilitates GATA4-driven gene expression. GATA4 chromatin occupancy changes markedly between fetal and adult heart, with a limitted binding sites overlap. Cardiac stress restored GATA4 occupancy to a subset of fetal sites, but many stress-associated GATA4 binding sites localized to loci not occupied by GATA4 during normal heart development. Collectively, our data show that dynamic, context-specific transcription factors occupancy underlies stage-specific events in development, homeostasis, and disease. 2014-09-24 /pmc/articles/PMC4236193/ /pubmed/25249388 http://dx.doi.org/10.1038/ncomms5907 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
He, Aibin
Gu, Fei
Hu, Yong
Ma, Qing
Yi Ye, Lillian
Akiyama, Jennifer A.
Visel, Axel
Pennacchio, Len A.
Pu, William T.
Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title_full Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title_fullStr Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title_full_unstemmed Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title_short Dynamic GATA4 enhancers shape the chromatin landscape central to heart development and disease
title_sort dynamic gata4 enhancers shape the chromatin landscape central to heart development and disease
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4236193/
https://www.ncbi.nlm.nih.gov/pubmed/25249388
http://dx.doi.org/10.1038/ncomms5907
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