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The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus

BACKGROUND: The excessive production of lactic acid by L. bulgaricus during yogurt storage is a phenomenon we are always tried to prevent. The methods used in industry either control the post-acidification inefficiently or kill the probiotics in yogurt. Genetic methods of changing the activity of on...

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Autores principales: Liu, Ke, Zeng, Xiangmiao, Qiao, Lei, Li, Xisheng, Yang, Yubo, Dai, Cuihong, Hou, Aiju, Xu, Dechang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248659/
https://www.ncbi.nlm.nih.gov/pubmed/25434877
http://dx.doi.org/10.1186/1471-2105-15-S13-S5
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author Liu, Ke
Zeng, Xiangmiao
Qiao, Lei
Li, Xisheng
Yang, Yubo
Dai, Cuihong
Hou, Aiju
Xu, Dechang
author_facet Liu, Ke
Zeng, Xiangmiao
Qiao, Lei
Li, Xisheng
Yang, Yubo
Dai, Cuihong
Hou, Aiju
Xu, Dechang
author_sort Liu, Ke
collection PubMed
description BACKGROUND: The excessive production of lactic acid by L. bulgaricus during yogurt storage is a phenomenon we are always tried to prevent. The methods used in industry either control the post-acidification inefficiently or kill the probiotics in yogurt. Genetic methods of changing the activity of one enzyme related to lactic acid metabolism make the bacteria short of energy to growth, although they are efficient ways in controlling lactic acid production. RESULTS: A model of pH-induced promoter regulation on the production of lactic acid by L. bulgaricus was built. The modelled lactic acid metabolism without pH-induced promoter regulation fitted well with wild type L. bulgaricus (R(2)(LAC )= 0.943, R(2)(LA )= 0.942). Both the local sensitivity analysis and Sobol sensitivity analysis indicated parameters T(max), GR, K(LR), S, V(0), V(1 )and d(LR )were sensitive. In order to guide the future biology experiments, three adjustable parameters, K(LR), V(0 )and V(1), were chosen for further simulations. V(0 )had little effect on lactic acid production if the pH-induced promoter could be well induced when pH decreased to its threshold. K(LR )and V(1 )both exhibited great influence on the producing of lactic acid. CONCLUSIONS: The proposed method of introducing a pH-induced promoter to regulate a repressor gene could restrain the synthesis of lactic acid if an appropriate strength of promoter and/or an appropriate strength of ribosome binding sequence (RBS) in lacR gene has been designed.
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spelling pubmed-42486592014-12-04 The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus Liu, Ke Zeng, Xiangmiao Qiao, Lei Li, Xisheng Yang, Yubo Dai, Cuihong Hou, Aiju Xu, Dechang BMC Bioinformatics Proceedings BACKGROUND: The excessive production of lactic acid by L. bulgaricus during yogurt storage is a phenomenon we are always tried to prevent. The methods used in industry either control the post-acidification inefficiently or kill the probiotics in yogurt. Genetic methods of changing the activity of one enzyme related to lactic acid metabolism make the bacteria short of energy to growth, although they are efficient ways in controlling lactic acid production. RESULTS: A model of pH-induced promoter regulation on the production of lactic acid by L. bulgaricus was built. The modelled lactic acid metabolism without pH-induced promoter regulation fitted well with wild type L. bulgaricus (R(2)(LAC )= 0.943, R(2)(LA )= 0.942). Both the local sensitivity analysis and Sobol sensitivity analysis indicated parameters T(max), GR, K(LR), S, V(0), V(1 )and d(LR )were sensitive. In order to guide the future biology experiments, three adjustable parameters, K(LR), V(0 )and V(1), were chosen for further simulations. V(0 )had little effect on lactic acid production if the pH-induced promoter could be well induced when pH decreased to its threshold. K(LR )and V(1 )both exhibited great influence on the producing of lactic acid. CONCLUSIONS: The proposed method of introducing a pH-induced promoter to regulate a repressor gene could restrain the synthesis of lactic acid if an appropriate strength of promoter and/or an appropriate strength of ribosome binding sequence (RBS) in lacR gene has been designed. BioMed Central 2014-11-13 /pmc/articles/PMC4248659/ /pubmed/25434877 http://dx.doi.org/10.1186/1471-2105-15-S13-S5 Text en Copyright © 2014 Liu et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Proceedings
Liu, Ke
Zeng, Xiangmiao
Qiao, Lei
Li, Xisheng
Yang, Yubo
Dai, Cuihong
Hou, Aiju
Xu, Dechang
The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title_full The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title_fullStr The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title_full_unstemmed The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title_short The sensitivity and significance analysis of parameters in the model of pH regulation on lactic acid production by Lactobacillus bulgaricus
title_sort sensitivity and significance analysis of parameters in the model of ph regulation on lactic acid production by lactobacillus bulgaricus
topic Proceedings
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4248659/
https://www.ncbi.nlm.nih.gov/pubmed/25434877
http://dx.doi.org/10.1186/1471-2105-15-S13-S5
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