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Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression
Isotonic regression is a useful tool to investigate the relationship between a quantitative covariate and a time-to-event outcome. The resulting non-parametric model is a monotonic step function of a covariate X and the steps can be viewed as change points in the underlying hazard function. However,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256386/ https://www.ncbi.nlm.nih.gov/pubmed/25473827 http://dx.doi.org/10.1371/journal.pone.0113948 |
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author | Ma, Yong Lai, Yinglei Lachin, John M. |
author_facet | Ma, Yong Lai, Yinglei Lachin, John M. |
author_sort | Ma, Yong |
collection | PubMed |
description | Isotonic regression is a useful tool to investigate the relationship between a quantitative covariate and a time-to-event outcome. The resulting non-parametric model is a monotonic step function of a covariate X and the steps can be viewed as change points in the underlying hazard function. However, when there are too many steps, over-fitting can occur and further reduction is desirable. We propose a reduced isotonic regression approach to allow combination of small neighboring steps that are not statistically significantly different. In this approach, a second stage, the reduction stage, is integrated into the usual monotonic step building algorithm by comparing the adjacent steps using appropriate statistical testing. This is achieved through a modified dynamic programming algorithm. We implemented the approach with the simple exponential distribution and then its extension, the Weibull distribution. Simulation studies are used to investigate the properties of the resulting isotonic functions. We apply this methodology to the Diabetes Control and Complication Trial (DCCT) data set to identify potential change points in the association between HbA1c and the risk of severe hypoglycemia. |
format | Online Article Text |
id | pubmed-4256386 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-42563862014-12-11 Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression Ma, Yong Lai, Yinglei Lachin, John M. PLoS One Research Article Isotonic regression is a useful tool to investigate the relationship between a quantitative covariate and a time-to-event outcome. The resulting non-parametric model is a monotonic step function of a covariate X and the steps can be viewed as change points in the underlying hazard function. However, when there are too many steps, over-fitting can occur and further reduction is desirable. We propose a reduced isotonic regression approach to allow combination of small neighboring steps that are not statistically significantly different. In this approach, a second stage, the reduction stage, is integrated into the usual monotonic step building algorithm by comparing the adjacent steps using appropriate statistical testing. This is achieved through a modified dynamic programming algorithm. We implemented the approach with the simple exponential distribution and then its extension, the Weibull distribution. Simulation studies are used to investigate the properties of the resulting isotonic functions. We apply this methodology to the Diabetes Control and Complication Trial (DCCT) data set to identify potential change points in the association between HbA1c and the risk of severe hypoglycemia. Public Library of Science 2014-12-04 /pmc/articles/PMC4256386/ /pubmed/25473827 http://dx.doi.org/10.1371/journal.pone.0113948 Text en © 2014 Ma et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Ma, Yong Lai, Yinglei Lachin, John M. Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title | Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title_full | Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title_fullStr | Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title_full_unstemmed | Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title_short | Identifying Change Points in a Covariate Effect on Time-to-Event Analysis with Reduced Isotonic Regression |
title_sort | identifying change points in a covariate effect on time-to-event analysis with reduced isotonic regression |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4256386/ https://www.ncbi.nlm.nih.gov/pubmed/25473827 http://dx.doi.org/10.1371/journal.pone.0113948 |
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