Cargando…

A systematic evaluation of high-dimensional, ensemble-based regression for exploring large model spaces in microbiome analyses

BACKGROUND: Microbiome studies incorporate next-generation sequencing to obtain profiles of microbial communities. Data generated from these experiments are high-dimensional with a rich correlation structure but modest sample sizes. A statistical model that utilizes these microbiome profiles to expl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shankar, Jyoti, Szpakowski, Sebastian, Solis, Norma V, Mounaud, Stephanie, Liu, Hong, Losada, Liliana, Nierman, William C, Filler, Scott G
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4339743/ https://www.ncbi.nlm.nih.gov/pubmed/25638274 http://dx.doi.org/10.1186/s12859-015-0467-6

Ejemplares similares

Using Bayesian modelling to investigate factors governing antibiotic-induced Candida albicans colonization of the GI tract
por: Shankar, Jyoti, et al.
Publicado: (2015)

Annotated Genome Sequence of Aspergillus tanneri NIH1004
por: Mounaud, Stephanie, et al.
Publicado: (2020)

The Human Lung Microbiome
por: Losada, Liliana, et al.
Publicado: (2010)

Federated Ensemble Regression Using Classification
por: Orhobor, Oghenejokpeme I., et al.
Publicado: (2020)

HIV-exposure, early life feeding practices and delivery mode impacts on faecal bacterial profiles in a South African birth cohort
por: Claassen-Weitz, Shantelle, et al.
Publicado: (2018)

Back to the Future for Dermatophyte Genomics
por: Rivera, Zeyana S., et al.
Publicado: (2012)

The In vitro Antibiotic Tolerant Persister Population in Burkholderia pseudomallei is Altered by Environmental Factors
por: Nierman, William C., et al.
Publicado: (2015)

Ensembl Genomes: Extending Ensembl across the taxonomic space
por: Kersey, P. J., et al.
Publicado: (2010)

A Heterogeneous Ensemble Approach for Travel Time Prediction Using Hybridized Feature Spaces and Support Vector Regression
por: Chughtai, Jawad-ur-Rehman, et al.
Publicado: (2022)

Depletion of the Microbiome Alters the Recruitment of Neuronal Ensembles of Oxycodone Intoxication and Withdrawal
por: Simpson, Sierra, et al.
Publicado: (2020)

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence
por: Losada, Liliana, et al.
Publicado: (2015)

Penalized Ordinal Regression Methods for Predicting Stage of Cancer in High-Dimensional Covariate Spaces
por: Gentry, Amanda Elswick, et al.
Publicado: (2015)

Strain Level Streptococcus Colonization Patterns during the First Year of Life
por: Wright, Meredith S., et al.
Publicado: (2017)

Scripting Analyses of Genomes in Ensembl Plants
por: Contreras-Moreira, Bruno, et al.
Publicado: (2022)

Ensembles on configuration space: classical, quantum, and beyond
por: Hall, Michael J W, et al.
Publicado: (2016)

Ensemble-Based Bounding Box Regression for Enhanced Knuckle Localization
por: Vyas, Ritesh, et al.
Publicado: (2022)

Classifying high-dimensional phenotypes with ensemble learning
por: Devine, Jay, et al.
Publicado: (2023)

Exploring Microbiome Functional Dynamics through Space and Time with Trait-Based Theory
por: Bittleston, Leonora S., et al.
Publicado: (2021)

Large Unbalanced Credit Scoring Using Lasso-Logistic Regression Ensemble
por: Wang, Hong, et al.
Publicado: (2015)

An Ensemble Penalized Regression Method for Multi-ancestry Polygenic Risk Prediction
por: Zhang, Jingning, et al.
Publicado: (2023)

Synonym extraction and abbreviation expansion with ensembles of semantic spaces
por: Henriksson, Aron, et al.
Publicado: (2014)

Identification of miRNA biomarkers for breast cancer by combining ensemble regularized multinomial logistic regression and Cox regression
por: Li, Juntao, et al.
Publicado: (2022)

Longitudinal changes in the nasopharyngeal resistome of South African infants using shotgun metagenomic sequencing
por: Manenzhe, Rendani I., et al.
Publicado: (2020)

EphA2 is an epithelial cell pattern recognition receptor for fungal β-glucans
por: Swidergall, Marc, et al.
Publicado: (2017)

Sequence Determination of Burkholderia pseudomallei Strain NCTC 13392 Colony Morphology Variants
por: Vipond, Julia, et al.
Publicado: (2013)

Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus
por: Krishnan, Karthik, et al.
Publicado: (2014)

Ensemble Linear Subspace Analysis of High-Dimensional Data
por: Ahmed, S. Ejaz, et al.
Publicado: (2021)

Incorporation of omics analyses into artificial gravity research for space exploration countermeasure development
por: Schmidt, Michael A., et al.
Publicado: (2016)

Gene Expression Profiling of Infecting Microbes Using a Digital Bar-coding Platform
por: Xu, Wenjie, et al.
Publicado: (2016)

Candida albicans oropharyngeal infection is an exception to iron-based nutritional immunity
por: Solis, Norma V., et al.
Publicado: (2023)

Candida albicans Oropharyngeal Infection Is an Exception to Iron-Based Nutritional Immunity
por: Solis, Norma V., et al.
Publicado: (2023)

Functional Dichotomy for a Hyphal Repressor in Candida albicans
por: Mao, Yinhe, et al.
Publicado: (2023)

Harmonic Analysis in Phase Space and Finite Weyl–Heisenberg Ensembles
por: Abreu, Luís Daniel, et al.
Publicado: (2019)

Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort
por: Claassen-Weitz, Shantelle, et al.
Publicado: (2023)

Regression analyses of questionnaires in bedside teaching
por: Ramackers, Wolf, et al.
Publicado: (2020)

Characterization of Pneumococcal Colonization Dynamics and Antimicrobial Resistance Using Shotgun Metagenomic Sequencing in Intensively Sampled South African Infants
por: Manenzhe, Rendani I., et al.
Publicado: (2020)

Ensemble Classification Approach for Sarcasm Detection
por: Godara, Jyoti, et al.
Publicado: (2021)

High-dimensional entanglement between distant atomic-ensemble memories
por: Ding, Dong-Sheng, et al.
Publicado: (2016)

Dimensional ensemble and (topological) fracton thermodynamics: the slow route to equilibrium
por: Flores, J. C.
Publicado: (2019)

Detecting Depression Using an Ensemble Logistic Regression Model Based on Multiple Speech Features
por: Jiang, Haihua, et al.
Publicado: (2018)

Cannot write session to /tmp/vufind_sessions/sess_r37pngsrciov8tbo48gpfh67s9