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A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning

Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS...

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Autores principales: Lee, Mei Yan, Diamond, Scott L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344206/
https://www.ncbi.nlm.nih.gov/pubmed/25723389
http://dx.doi.org/10.1371/journal.pcbi.1004118
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author Lee, Mei Yan
Diamond, Scott L.
author_facet Lee, Mei Yan
Diamond, Scott L.
author_sort Lee, Mei Yan
collection PubMed
description Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS) deployed all single and pairwise combinations of six agonists (ADP, convulxin, thrombin, U46619, iloprost and GSNO used at 0.1, 1, and 10xEC(50); 154 conditions including a null condition) to stimulate platelet P(2)Y(1)/P2Y(12) GPVI, PAR1/PAR4, TP, IP receptors, and guanylate cyclase, respectively, in Factor Xa-inhibited (250 nM apixaban), diluted platelet rich plasma that had been loaded with the calcium dye Fluo-4 NW. PAS of 10 healthy donors provided [Ca(t)](i) data for training 10 neural networks (NN, 2-layer/12-nodes) per donor. Trinary stimulations were then conducted at all 0.1x and 1xEC(50) doses (160 conditions) as was a sampling of 45 higher ordered combinations (four to six agonists). The NN-ensemble average was a calcium calculator that accurately predicted [Ca (t)](i) beyond the single and binary training set for trinary stimulations (R = 0.924). The 160 trinary synergy scores, a normalized metric of signaling crosstalk, were also well predicted (R = 0.850) as were the calcium dynamics (R = 0.871) and high-dimensional synergy scores (R = 0.695) for the 45 higher ordered conditions. The calculator even predicted sequential addition experiments (n = 54 conditions, R = 0.921). NN-ensemble is a fast calcium calculator, ideal for multiscale clotting simulations that include spatiotemporal concentrations of ADP, collagen, thrombin, thromboxane, prostacyclin, and nitric oxide.
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spelling pubmed-43442062015-03-04 A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning Lee, Mei Yan Diamond, Scott L. PLoS Comput Biol Research Article Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS) deployed all single and pairwise combinations of six agonists (ADP, convulxin, thrombin, U46619, iloprost and GSNO used at 0.1, 1, and 10xEC(50); 154 conditions including a null condition) to stimulate platelet P(2)Y(1)/P2Y(12) GPVI, PAR1/PAR4, TP, IP receptors, and guanylate cyclase, respectively, in Factor Xa-inhibited (250 nM apixaban), diluted platelet rich plasma that had been loaded with the calcium dye Fluo-4 NW. PAS of 10 healthy donors provided [Ca(t)](i) data for training 10 neural networks (NN, 2-layer/12-nodes) per donor. Trinary stimulations were then conducted at all 0.1x and 1xEC(50) doses (160 conditions) as was a sampling of 45 higher ordered combinations (four to six agonists). The NN-ensemble average was a calcium calculator that accurately predicted [Ca (t)](i) beyond the single and binary training set for trinary stimulations (R = 0.924). The 160 trinary synergy scores, a normalized metric of signaling crosstalk, were also well predicted (R = 0.850) as were the calcium dynamics (R = 0.871) and high-dimensional synergy scores (R = 0.695) for the 45 higher ordered conditions. The calculator even predicted sequential addition experiments (n = 54 conditions, R = 0.921). NN-ensemble is a fast calcium calculator, ideal for multiscale clotting simulations that include spatiotemporal concentrations of ADP, collagen, thrombin, thromboxane, prostacyclin, and nitric oxide. Public Library of Science 2015-02-27 /pmc/articles/PMC4344206/ /pubmed/25723389 http://dx.doi.org/10.1371/journal.pcbi.1004118 Text en © 2015 Lee, Diamond http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Lee, Mei Yan
Diamond, Scott L.
A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title_full A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title_fullStr A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title_full_unstemmed A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title_short A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
title_sort human platelet calcium calculator trained by pairwise agonist scanning
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344206/
https://www.ncbi.nlm.nih.gov/pubmed/25723389
http://dx.doi.org/10.1371/journal.pcbi.1004118
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