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A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning
Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344206/ https://www.ncbi.nlm.nih.gov/pubmed/25723389 http://dx.doi.org/10.1371/journal.pcbi.1004118 |
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author | Lee, Mei Yan Diamond, Scott L. |
author_facet | Lee, Mei Yan Diamond, Scott L. |
author_sort | Lee, Mei Yan |
collection | PubMed |
description | Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS) deployed all single and pairwise combinations of six agonists (ADP, convulxin, thrombin, U46619, iloprost and GSNO used at 0.1, 1, and 10xEC(50); 154 conditions including a null condition) to stimulate platelet P(2)Y(1)/P2Y(12) GPVI, PAR1/PAR4, TP, IP receptors, and guanylate cyclase, respectively, in Factor Xa-inhibited (250 nM apixaban), diluted platelet rich plasma that had been loaded with the calcium dye Fluo-4 NW. PAS of 10 healthy donors provided [Ca(t)](i) data for training 10 neural networks (NN, 2-layer/12-nodes) per donor. Trinary stimulations were then conducted at all 0.1x and 1xEC(50) doses (160 conditions) as was a sampling of 45 higher ordered combinations (four to six agonists). The NN-ensemble average was a calcium calculator that accurately predicted [Ca (t)](i) beyond the single and binary training set for trinary stimulations (R = 0.924). The 160 trinary synergy scores, a normalized metric of signaling crosstalk, were also well predicted (R = 0.850) as were the calcium dynamics (R = 0.871) and high-dimensional synergy scores (R = 0.695) for the 45 higher ordered conditions. The calculator even predicted sequential addition experiments (n = 54 conditions, R = 0.921). NN-ensemble is a fast calcium calculator, ideal for multiscale clotting simulations that include spatiotemporal concentrations of ADP, collagen, thrombin, thromboxane, prostacyclin, and nitric oxide. |
format | Online Article Text |
id | pubmed-4344206 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-43442062015-03-04 A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning Lee, Mei Yan Diamond, Scott L. PLoS Comput Biol Research Article Since platelet intracellular calcium mobilization [Ca(t)](i) controls granule release, cyclooxygenase-1 and integrin activation, and phosphatidylserine exposure, blood clotting simulations require prediction of platelet [Ca(t)](i) in response to combinatorial agonists. Pairwise Agonist Scanning (PAS) deployed all single and pairwise combinations of six agonists (ADP, convulxin, thrombin, U46619, iloprost and GSNO used at 0.1, 1, and 10xEC(50); 154 conditions including a null condition) to stimulate platelet P(2)Y(1)/P2Y(12) GPVI, PAR1/PAR4, TP, IP receptors, and guanylate cyclase, respectively, in Factor Xa-inhibited (250 nM apixaban), diluted platelet rich plasma that had been loaded with the calcium dye Fluo-4 NW. PAS of 10 healthy donors provided [Ca(t)](i) data for training 10 neural networks (NN, 2-layer/12-nodes) per donor. Trinary stimulations were then conducted at all 0.1x and 1xEC(50) doses (160 conditions) as was a sampling of 45 higher ordered combinations (four to six agonists). The NN-ensemble average was a calcium calculator that accurately predicted [Ca (t)](i) beyond the single and binary training set for trinary stimulations (R = 0.924). The 160 trinary synergy scores, a normalized metric of signaling crosstalk, were also well predicted (R = 0.850) as were the calcium dynamics (R = 0.871) and high-dimensional synergy scores (R = 0.695) for the 45 higher ordered conditions. The calculator even predicted sequential addition experiments (n = 54 conditions, R = 0.921). NN-ensemble is a fast calcium calculator, ideal for multiscale clotting simulations that include spatiotemporal concentrations of ADP, collagen, thrombin, thromboxane, prostacyclin, and nitric oxide. Public Library of Science 2015-02-27 /pmc/articles/PMC4344206/ /pubmed/25723389 http://dx.doi.org/10.1371/journal.pcbi.1004118 Text en © 2015 Lee, Diamond http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Lee, Mei Yan Diamond, Scott L. A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title | A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title_full | A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title_fullStr | A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title_full_unstemmed | A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title_short | A Human Platelet Calcium Calculator Trained by Pairwise Agonist Scanning |
title_sort | human platelet calcium calculator trained by pairwise agonist scanning |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4344206/ https://www.ncbi.nlm.nih.gov/pubmed/25723389 http://dx.doi.org/10.1371/journal.pcbi.1004118 |
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