Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

When computing alignments of DNA sequences to a large genome, a key element in achieving high processing throughput is to prioritize locations in the genome where high-scoring mappings might be expected. We formulated this task as a series of list-processing operations that can be efficiently perfor...

Descripción completa

Detalles Bibliográficos
Autores principales: Wilton, Richard, Budavari, Tamas, Langmead, Ben, Wheelan, Sarah J., Salzberg, Steven L., Szalay, Alexander S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2015
Materias:
Bioinformatics
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4358639/
https://www.ncbi.nlm.nih.gov/pubmed/25780763
http://dx.doi.org/10.7717/peerj.808

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4358639/
https://www.ncbi.nlm.nih.gov/pubmed/25780763
http://dx.doi.org/10.7717/peerj.808

Ejemplares similares