ContextMap 2: fast and accurate context-based RNA-seq mapping

BACKGROUND: Mapping of short sequencing reads is a crucial step in the analysis of RNA sequencing (RNA-seq) data. ContextMap is an RNA-seq mapping algorithm that uses a context-based approach to identify the best alignment for each read and allows parallel mapping against several reference genomes....

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Detalles Bibliográficos
Autores principales: Bonfert, Thomas, Kirner, Evelyn, Csaba, Gergely, Zimmer, Ralf, Friedel, Caroline C
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411664/
https://www.ncbi.nlm.nih.gov/pubmed/25928589
http://dx.doi.org/10.1186/s12859-015-0557-5

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4411664/
https://www.ncbi.nlm.nih.gov/pubmed/25928589
http://dx.doi.org/10.1186/s12859-015-0557-5

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