Cargando…

A multi-SNP association test for complex diseases incorporating an optimal P-value threshold algorithm in nuclear families

BACKGROUND: Genome-wide association studies (GWAS) have become a common approach to identifying single nucleotide polymorphisms (SNPs) associated with complex diseases. As complex diseases are caused by the joint effects of multiple genes, while the effect of individual gene or SNP is modest, a meth...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Yi-Ting, Sung, Pei-Yuan, Lin, Peng-Lin, Yu, Ya-Wen, Chung, Ren-Hua
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4433014/ https://www.ncbi.nlm.nih.gov/pubmed/25975968 http://dx.doi.org/10.1186/s12864-015-1620-3

Ejemplares similares

Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
por: Chuang, Li-Yeh, et al.
Publicado: (2013)

Rebuilding DEMATEL threshold value: an example of a food and beverage information system
por: Hsieh, Yi-Fang, et al.
Publicado: (2016)

New algorithm improves fine structure of the barley consensus SNP map
por: Endelman, Jeffrey B
Publicado: (2011)

Learning the optimal scale for GWAS through hierarchical SNP aggregation
por: Guinot, Florent, et al.
Publicado: (2018)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

MultiCenter Interrupted Time Series Analysis: Incorporating Within and Between-Center Heterogeneity
por: Ewusie, Joycelyne E, et al.
Publicado: (2020)

An effective docking strategy for virtual screening based on multi-objective optimization algorithm
por: Li, Honglin, et al.
Publicado: (2009)

Incorporating functional inter-relationships into protein function prediction algorithms
por: Pandey, Gaurav, et al.
Publicado: (2009)

Statistical significance: p value, 0.05 threshold, and applications to radiomics—reasons for a conservative approach
por: Di Leo, Giovanni, et al.
Publicado: (2020)

SAQC: SNP Array Quality Control
por: Yang, Hsin-Chou, et al.
Publicado: (2011)

Protein folding prediction in the HP model using ions motion optimization with a greedy algorithm
por: Yang, Cheng-Hong, et al.
Publicado: (2018)

Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize
por: Hsu, Fei-Man, et al.
Publicado: (2017)

Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates
por: Sengstake, Sarah, et al.
Publicado: (2014)

A novel algorithm for simultaneous SNP selection in high-dimensional genome-wide association studies
por: Zuber, Verena, et al.
Publicado: (2012)

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
por: Van Geystelen, Anneleen, et al.
Publicado: (2013)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins
por: Bagos, Pantelis G, et al.
Publicado: (2006)

Fast and SNP-aware short read alignment with SALT
por: Quan, Wei, et al.
Publicado: (2021)

Confronting two-pair primer design for enzyme-free SNP genotyping based on a genetic algorithm
por: Yang, Cheng-Hong, et al.
Publicado: (2010)

Haplotype-based score test for linkage in nuclear families
por: Nam, Chung Mo, et al.
Publicado: (2007)

Assessing optimal: inequalities in codon optimization algorithms
por: Ranaghan, Matthew J., et al.
Publicado: (2021)

Bacterial rose garden for metagenomic SNP-based phylogeny visualization
por: Alexeev, Dmitry, et al.
Publicado: (2015)

Comparison of three PCR-based assays for SNP genotyping in plants
por: Broccanello, Chiara, et al.
Publicado: (2018)

Optimization of selective stimulation parameters for multi-contact electrodes
por: Fisher, Lee E, et al.
Publicado: (2013)

Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan
por: Ting, Jason C, et al.
Publicado: (2006)

Advantages of Amplifluor-like SNP markers over KASP in plant genotyping
por: Jatayev, Satyvaldy, et al.
Publicado: (2017)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
por: LaBarre, Brenna A., et al.
Publicado: (2019)

A microarray platform and novel SNP calling algorithm to evaluate Plasmodium falciparum field samples of low DNA quantity
por: Jacob, Christopher G, et al.
Publicado: (2014)

An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies
por: Bera, Betelehem Solomon, et al.
Publicado: (2023)

Multi-year optimization of malaria intervention: a mathematical model
por: Dudley, Harry J., et al.
Publicado: (2016)

epiACO - a method for identifying epistasis based on ant Colony optimization algorithm
por: Sun, Yingxia, et al.
Publicado: (2017)

A high-throughput SNP discovery strategy for RNA-seq data
por: Zhao, Yun, et al.
Publicado: (2019)

A general SNP-based molecular barcode for Plasmodium falciparum identification and tracking
por: Daniels, Rachel, et al.
Publicado: (2008)

Symmetric cross-entropy multi-threshold color image segmentation based on improved pelican optimization algorithm
por: Zhang, Chuang, et al.
Publicado: (2023)

Estimating genome-wide DNA methylation heterogeneity with methylation patterns
por: Lin, Pei-Yu, et al.
Publicado: (2023)

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy
por: Pryor, Alan, et al.
Publicado: (2017)

Optimization algorithms for functional deimmunization of therapeutic proteins
por: Parker, Andrew S, et al.
Publicado: (2010)

Application of machine learning in SNP discovery
por: Matukumalli, Lakshmi K, et al.
Publicado: (2006)

SNP calling by sequencing pooled samples
por: Raineri, Emanuele, et al.
Publicado: (2012)

On the impact of relatedness on SNP association analysis
por: Gross, Arnd, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_6pdsravi8epdm6le4pbaff8rvj