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An overhang-based DNA block shuffling method for creating a customized random library
We present an overhang-based DNA block shuffling method to create a customized random DNA library with flexible sequence design and length. Our method enables the efficient and seamless assembly of short DNA blocks with dinucleotide overhangs through a simple ligation process. Next generation sequen...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443763/ https://www.ncbi.nlm.nih.gov/pubmed/26010273 http://dx.doi.org/10.1038/srep09740 |
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author | Fujishima, Kosuke Venter, Chris Wang, Kendrick Ferreira, Raphael Rothschild, Lynn J. |
author_facet | Fujishima, Kosuke Venter, Chris Wang, Kendrick Ferreira, Raphael Rothschild, Lynn J. |
author_sort | Fujishima, Kosuke |
collection | PubMed |
description | We present an overhang-based DNA block shuffling method to create a customized random DNA library with flexible sequence design and length. Our method enables the efficient and seamless assembly of short DNA blocks with dinucleotide overhangs through a simple ligation process. Next generation sequencing analysis of the assembled DNA library revealed that ligation was accurate, directional and unbiased. This straightforward DNA assembly method should fulfill the versatile needs of both in vivo and in vitro functional screening of random peptides and RNA created with a desired amino acid and nucleotide composition, as well as making highly repetitive gene constructs that are difficult to synthesize de novo. |
format | Online Article Text |
id | pubmed-4443763 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-44437632015-06-01 An overhang-based DNA block shuffling method for creating a customized random library Fujishima, Kosuke Venter, Chris Wang, Kendrick Ferreira, Raphael Rothschild, Lynn J. Sci Rep Article We present an overhang-based DNA block shuffling method to create a customized random DNA library with flexible sequence design and length. Our method enables the efficient and seamless assembly of short DNA blocks with dinucleotide overhangs through a simple ligation process. Next generation sequencing analysis of the assembled DNA library revealed that ligation was accurate, directional and unbiased. This straightforward DNA assembly method should fulfill the versatile needs of both in vivo and in vitro functional screening of random peptides and RNA created with a desired amino acid and nucleotide composition, as well as making highly repetitive gene constructs that are difficult to synthesize de novo. Nature Publishing Group 2015-05-26 /pmc/articles/PMC4443763/ /pubmed/26010273 http://dx.doi.org/10.1038/srep09740 Text en Copyright © 2015, Macmillan Publishers Limited. All rights reserved http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder in order to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Fujishima, Kosuke Venter, Chris Wang, Kendrick Ferreira, Raphael Rothschild, Lynn J. An overhang-based DNA block shuffling method for creating a customized random library |
title | An overhang-based DNA block shuffling method for creating a customized random library |
title_full | An overhang-based DNA block shuffling method for creating a customized random library |
title_fullStr | An overhang-based DNA block shuffling method for creating a customized random library |
title_full_unstemmed | An overhang-based DNA block shuffling method for creating a customized random library |
title_short | An overhang-based DNA block shuffling method for creating a customized random library |
title_sort | overhang-based dna block shuffling method for creating a customized random library |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4443763/ https://www.ncbi.nlm.nih.gov/pubmed/26010273 http://dx.doi.org/10.1038/srep09740 |
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