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A transcription and translation-coupled DNA replication system using rolling-circle replication

All living organisms have a genome replication system in which genomic DNA is replicated by a DNA polymerase translated from mRNA transcribed from the genome. The artificial reconstitution of this genome replication system is a great challenge in in vitro synthetic biology. In this study, we attempt...

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Autores principales: Sakatani, Yoshihiro, Ichihashi, Norikazu, Kazuta, Yasuaki, Yomo, Tetsuya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445062/
https://www.ncbi.nlm.nih.gov/pubmed/26013404
http://dx.doi.org/10.1038/srep10404
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author Sakatani, Yoshihiro
Ichihashi, Norikazu
Kazuta, Yasuaki
Yomo, Tetsuya
author_facet Sakatani, Yoshihiro
Ichihashi, Norikazu
Kazuta, Yasuaki
Yomo, Tetsuya
author_sort Sakatani, Yoshihiro
collection PubMed
description All living organisms have a genome replication system in which genomic DNA is replicated by a DNA polymerase translated from mRNA transcribed from the genome. The artificial reconstitution of this genome replication system is a great challenge in in vitro synthetic biology. In this study, we attempted to construct a transcription- and translation-coupled DNA replication (TTcDR) system using circular genomic DNA encoding phi29 DNA polymerase and a reconstituted transcription and translation system. In this system, phi29 DNA polymerase was translated from the genome and replicated the genome in a rolling-circle manner. When using a traditional translation system composition, almost no DNA replication was observed, because the tRNA and nucleoside triphosphates included in the translation system significantly inhibited DNA replication. To minimize these inhibitory effects, we optimized the composition of the TTcDR system and improved replication by approximately 100-fold. Using our system, genomic DNA was replicated up to 10 times in 12 hours at 30 °C. This system provides a step toward the in vitro construction of an artificial genome replication system, which is a prerequisite for the construction of an artificial cell.
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spelling pubmed-44450622015-06-01 A transcription and translation-coupled DNA replication system using rolling-circle replication Sakatani, Yoshihiro Ichihashi, Norikazu Kazuta, Yasuaki Yomo, Tetsuya Sci Rep Article All living organisms have a genome replication system in which genomic DNA is replicated by a DNA polymerase translated from mRNA transcribed from the genome. The artificial reconstitution of this genome replication system is a great challenge in in vitro synthetic biology. In this study, we attempted to construct a transcription- and translation-coupled DNA replication (TTcDR) system using circular genomic DNA encoding phi29 DNA polymerase and a reconstituted transcription and translation system. In this system, phi29 DNA polymerase was translated from the genome and replicated the genome in a rolling-circle manner. When using a traditional translation system composition, almost no DNA replication was observed, because the tRNA and nucleoside triphosphates included in the translation system significantly inhibited DNA replication. To minimize these inhibitory effects, we optimized the composition of the TTcDR system and improved replication by approximately 100-fold. Using our system, genomic DNA was replicated up to 10 times in 12 hours at 30 °C. This system provides a step toward the in vitro construction of an artificial genome replication system, which is a prerequisite for the construction of an artificial cell. Nature Publishing Group 2015-05-27 /pmc/articles/PMC4445062/ /pubmed/26013404 http://dx.doi.org/10.1038/srep10404 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Sakatani, Yoshihiro
Ichihashi, Norikazu
Kazuta, Yasuaki
Yomo, Tetsuya
A transcription and translation-coupled DNA replication system using rolling-circle replication
title A transcription and translation-coupled DNA replication system using rolling-circle replication
title_full A transcription and translation-coupled DNA replication system using rolling-circle replication
title_fullStr A transcription and translation-coupled DNA replication system using rolling-circle replication
title_full_unstemmed A transcription and translation-coupled DNA replication system using rolling-circle replication
title_short A transcription and translation-coupled DNA replication system using rolling-circle replication
title_sort transcription and translation-coupled dna replication system using rolling-circle replication
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4445062/
https://www.ncbi.nlm.nih.gov/pubmed/26013404
http://dx.doi.org/10.1038/srep10404
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