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Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins

Covalent labeling of solvent exposed amino acid residues using chemical reagents/crosslinkers followed by mass spectrometric analysis can be used to determine the solvent accessible amino acids of a protein. A variety of chemical reagents containing cleavable bonds were developed to label abundantly...

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Autores principales: Patil, Ujwal S., Osorno, Laura, Ellender, Angela, Grimm, Casey, Tarr, Matthew A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510550/
https://www.ncbi.nlm.nih.gov/pubmed/26217806
http://dx.doi.org/10.1016/j.dib.2015.05.025
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author Patil, Ujwal S.
Osorno, Laura
Ellender, Angela
Grimm, Casey
Tarr, Matthew A
author_facet Patil, Ujwal S.
Osorno, Laura
Ellender, Angela
Grimm, Casey
Tarr, Matthew A
author_sort Patil, Ujwal S.
collection PubMed
description Covalent labeling of solvent exposed amino acid residues using chemical reagents/crosslinkers followed by mass spectrometric analysis can be used to determine the solvent accessible amino acids of a protein. A variety of chemical reagents containing cleavable bonds were developed to label abundantly found lysine residues on the surface of protein. To achieve efficient separation of labeled peptides prior to mass spectrometric analysis, magnetic nanoparticles can be decorated with amino acid reactive functional groups and utilized for quick recovery of labeled peptides. [1] In this work, iron oxide magnetic nanoparticles (Fe(3)O(4) MNPs) were synthesized by thermal decomposition method and coated with silica (SiO(2)@Fe(3)O(4) MNPs) by reverse micro emulsion approach. The Fe(3)O(4) MNPs and SiO(2)@Fe(3)O(4) MNPs were characterized by TEM and XRD. The SiO(2)@Fe(3)O(4) MNPs were further coated with amine groups and conjugated to N-hydroxysuccinimidyl (NHS) ester groups via a cleavable ester bond. Fluorescence based qualitative analysis of ester linked NHS ester modified SiO(2)@Fe(3)O(4) MNPs was performed to confirm the presence of NHS ester group. The active NHS ester sites on the surface of SiO(2)@Fe(3)O(4) MNPs were determined by depletion approach and found to be 694 active sites per 1 mg of SiO(2)@Fe(3)O(4) MNPs. Free amine groups of a small peptide, ACTH (4–11) were labeled by ester linked, NHS ester modified SiO(2)@Fe(3)O(4) MNPs under physiological conditions. Superparamagnetic nature of SiO(2)@Fe(3)O(4) MNPs allowed quick and efficient magnetic separation of labeled peptides from the solution. The ester bond was further cleaved to separate labeled peptides followed by mass spectrometric analysis. The ester linked, NHS ester modified SiO(2)@Fe(3)O(4) MNPs introduced a mass shift of 115.09 Da on amine groups of ACTH (4–11), which was confirmed by mass spectrometry.
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spelling pubmed-45105502015-07-27 Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins Patil, Ujwal S. Osorno, Laura Ellender, Angela Grimm, Casey Tarr, Matthew A Data Brief Biochemistry, Genetics and Molecular Biology Covalent labeling of solvent exposed amino acid residues using chemical reagents/crosslinkers followed by mass spectrometric analysis can be used to determine the solvent accessible amino acids of a protein. A variety of chemical reagents containing cleavable bonds were developed to label abundantly found lysine residues on the surface of protein. To achieve efficient separation of labeled peptides prior to mass spectrometric analysis, magnetic nanoparticles can be decorated with amino acid reactive functional groups and utilized for quick recovery of labeled peptides. [1] In this work, iron oxide magnetic nanoparticles (Fe(3)O(4) MNPs) were synthesized by thermal decomposition method and coated with silica (SiO(2)@Fe(3)O(4) MNPs) by reverse micro emulsion approach. The Fe(3)O(4) MNPs and SiO(2)@Fe(3)O(4) MNPs were characterized by TEM and XRD. The SiO(2)@Fe(3)O(4) MNPs were further coated with amine groups and conjugated to N-hydroxysuccinimidyl (NHS) ester groups via a cleavable ester bond. Fluorescence based qualitative analysis of ester linked NHS ester modified SiO(2)@Fe(3)O(4) MNPs was performed to confirm the presence of NHS ester group. The active NHS ester sites on the surface of SiO(2)@Fe(3)O(4) MNPs were determined by depletion approach and found to be 694 active sites per 1 mg of SiO(2)@Fe(3)O(4) MNPs. Free amine groups of a small peptide, ACTH (4–11) were labeled by ester linked, NHS ester modified SiO(2)@Fe(3)O(4) MNPs under physiological conditions. Superparamagnetic nature of SiO(2)@Fe(3)O(4) MNPs allowed quick and efficient magnetic separation of labeled peptides from the solution. The ester bond was further cleaved to separate labeled peptides followed by mass spectrometric analysis. The ester linked, NHS ester modified SiO(2)@Fe(3)O(4) MNPs introduced a mass shift of 115.09 Da on amine groups of ACTH (4–11), which was confirmed by mass spectrometry. Elsevier 2015-06-18 /pmc/articles/PMC4510550/ /pubmed/26217806 http://dx.doi.org/10.1016/j.dib.2015.05.025 Text en © 2015 Published by Elsevier Inc. http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Patil, Ujwal S.
Osorno, Laura
Ellender, Angela
Grimm, Casey
Tarr, Matthew A
Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title_full Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title_fullStr Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title_full_unstemmed Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title_short Cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
title_sort cleavable ester linked magnetic nanoparticles for labeling of solvent exposed primary amine groups of peptides/proteins
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4510550/
https://www.ncbi.nlm.nih.gov/pubmed/26217806
http://dx.doi.org/10.1016/j.dib.2015.05.025
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