The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity

This Data Descriptor announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has b...

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Autores principales: Payne, Samuel H., Monroe, Matthew E., Overall, Christopher C., Kiebel, Gary R., Degan, Michael, Gibbons, Bryson C., Fujimoto, Grant M., Purvine, Samuel O., Adkins, Joshua N., Lipton, Mary S., Smith, Richard D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Data Descriptor
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4540001/
https://www.ncbi.nlm.nih.gov/pubmed/26306205
http://dx.doi.org/10.1038/sdata.2015.41
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author Payne, Samuel H.
Monroe, Matthew E.
Overall, Christopher C.
Kiebel, Gary R.
Degan, Michael
Gibbons, Bryson C.
Fujimoto, Grant M.
Purvine, Samuel O.
Adkins, Joshua N.
Lipton, Mary S.
Smith, Richard D.
author_facet Payne, Samuel H.
Monroe, Matthew E.
Overall, Christopher C.
Kiebel, Gary R.
Degan, Michael
Gibbons, Bryson C.
Fujimoto, Grant M.
Purvine, Samuel O.
Adkins, Joshua N.
Lipton, Mary S.
Smith, Richard D.
author_sort Payne, Samuel H.
collection PubMed
description This Data Descriptor announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modelling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053.
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spelling pubmed-45400012015-08-24 The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity Payne, Samuel H. Monroe, Matthew E. Overall, Christopher C. Kiebel, Gary R. Degan, Michael Gibbons, Bryson C. Fujimoto, Grant M. Purvine, Samuel O. Adkins, Joshua N. Lipton, Mary S. Smith, Richard D. Sci Data Data Descriptor This Data Descriptor announces the submission to public repositories of the PNNL Biodiversity Library, a large collection of global proteomics data for 112 bacterial and archaeal organisms. The data comprises 35,162 tandem mass spectrometry (MS/MS) datasets from ~10 years of research. All data has been searched, annotated and organized in a consistent manner to promote reuse by the community. Protein identifications were cross-referenced with KEGG functional annotations which allows for pathway oriented investigation. We present the data as a freely available community resource. A variety of data re-use options are described for computational modelling, proteomics assay design and bioengineering. Instrument data and analysis files are available at ProteomeXchange via the MassIVE partner repository under the identifiers PXD001860 and MSV000079053. Nature Publishing Group 2015-08-18 /pmc/articles/PMC4540001/ /pubmed/26306205 http://dx.doi.org/10.1038/sdata.2015.41 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Payne, Samuel H.
Monroe, Matthew E.
Overall, Christopher C.
Kiebel, Gary R.
Degan, Michael
Gibbons, Bryson C.
Fujimoto, Grant M.
Purvine, Samuel O.
Adkins, Joshua N.
Lipton, Mary S.
Smith, Richard D.
The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title_full The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title_fullStr The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title_full_unstemmed The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title_short The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity
title_sort pacific northwest national laboratory library of bacterial and archaeal proteomic biodiversity
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4540001/
https://www.ncbi.nlm.nih.gov/pubmed/26306205
http://dx.doi.org/10.1038/sdata.2015.41
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