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Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery
Helium ion microscopes (HIM) are capable of acquiring images with better than 1 nm resolution, and HIM images are particularly rich in morphological surface details. However, such images are generally quite noisy. A major challenge is to denoise these images while preserving delicate surface informa...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
[Gaithersburg, MD] : U.S. Dept. of Commerce, National Institute of Standards and Technology
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4553881/ https://www.ncbi.nlm.nih.gov/pubmed/26900518 http://dx.doi.org/10.6028/jres.117.006 |
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author | Carasso, Alfred S. Vladár, András E. |
author_facet | Carasso, Alfred S. Vladár, András E. |
author_sort | Carasso, Alfred S. |
collection | PubMed |
description | Helium ion microscopes (HIM) are capable of acquiring images with better than 1 nm resolution, and HIM images are particularly rich in morphological surface details. However, such images are generally quite noisy. A major challenge is to denoise these images while preserving delicate surface information. This paper presents a powerful slow motion denoising technique, based on solving linear fractional diffusion equations forward in time. The method is easily implemented computationally, using fast Fourier transform (FFT) algorithms. When applied to actual HIM images, the method is found to reproduce the essential surface morphology of the sample with high fidelity. In contrast, such highly sophisticated methodologies as Curvelet Transform denoising, and Total Variation denoising using split Bregman iterations, are found to eliminate vital fine scale information, along with the noise. Image Lipschitz exponents are a useful image metrology tool for quantifying the fine structure content in an image. In this paper, this tool is applied to rank order the above three distinct denoising approaches, in terms of their texture preserving properties. In several denoising experiments on actual HIM images, it was found that fractional diffusion smoothing performed noticeably better than split Bregman TV, which in turn, performed slightly better than Curvelet denoising. |
format | Online Article Text |
id | pubmed-4553881 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | [Gaithersburg, MD] : U.S. Dept. of Commerce, National Institute of Standards and Technology |
record_format | MEDLINE/PubMed |
spelling | pubmed-45538812016-02-19 Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery Carasso, Alfred S. Vladár, András E. J Res Natl Inst Stand Technol Article Helium ion microscopes (HIM) are capable of acquiring images with better than 1 nm resolution, and HIM images are particularly rich in morphological surface details. However, such images are generally quite noisy. A major challenge is to denoise these images while preserving delicate surface information. This paper presents a powerful slow motion denoising technique, based on solving linear fractional diffusion equations forward in time. The method is easily implemented computationally, using fast Fourier transform (FFT) algorithms. When applied to actual HIM images, the method is found to reproduce the essential surface morphology of the sample with high fidelity. In contrast, such highly sophisticated methodologies as Curvelet Transform denoising, and Total Variation denoising using split Bregman iterations, are found to eliminate vital fine scale information, along with the noise. Image Lipschitz exponents are a useful image metrology tool for quantifying the fine structure content in an image. In this paper, this tool is applied to rank order the above three distinct denoising approaches, in terms of their texture preserving properties. In several denoising experiments on actual HIM images, it was found that fractional diffusion smoothing performed noticeably better than split Bregman TV, which in turn, performed slightly better than Curvelet denoising. [Gaithersburg, MD] : U.S. Dept. of Commerce, National Institute of Standards and Technology 2012-02-22 /pmc/articles/PMC4553881/ /pubmed/26900518 http://dx.doi.org/10.6028/jres.117.006 Text en https://creativecommons.org/publicdomain/zero/1.0/ The Journal of Research of the National Institute of Standards and Technology is a publication of the U.S. Government. The papers are in the public domain and are not subject to copyright in the United States. Articles from J Res may contain photographs or illustrations copyrighted by other commercial organizations or individuals that may not be used without obtaining prior approval from the holder of the copyright. |
spellingShingle | Article Carasso, Alfred S. Vladár, András E. Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title | Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title_full | Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title_fullStr | Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title_full_unstemmed | Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title_short | Fractional Diffusion, Low Exponent Lévy Stable Laws, and ‘Slow Motion’ Denoising of Helium Ion Microscope Nanoscale Imagery |
title_sort | fractional diffusion, low exponent lévy stable laws, and ‘slow motion’ denoising of helium ion microscope nanoscale imagery |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4553881/ https://www.ncbi.nlm.nih.gov/pubmed/26900518 http://dx.doi.org/10.6028/jres.117.006 |
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