Chi8: a GPU program for detecting significant interacting SNPs with the Chi-square 8-df test

BACKGROUND: Determining interacting SNPs in genome-wide association studies is computationally expensive yet of considerable interest in genomics. FINDINGS: We present a program Chi8 that calculates the Chi-square 8 degree of freedom test between all pairs of SNPs in a brute force manner on a Graphi...

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Detalles Bibliográficos
Autores principales: Al-jouie, Abdulrhman, Esfandiari, Mohammadreza, Ramakrishnan, Srividya, Roshan, Usman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Technical Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4568583/
https://www.ncbi.nlm.nih.gov/pubmed/26369336
http://dx.doi.org/10.1186/s13104-015-1392-5

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4568583/
https://www.ncbi.nlm.nih.gov/pubmed/26369336
http://dx.doi.org/10.1186/s13104-015-1392-5

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