The khmer software package: enabling efficient nucleotide sequence analysis

The khmer package is a freely available software library for working efficiently with fixed length DNA words, or k-mers. khmer provides implementations of a probabilistic k-mer counting data structure, a compressible De Bruijn graph representation, De Bruijn graph partitioning, and digital normaliza...

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Detalles Bibliográficos
Autores principales: Crusoe, Michael R., Alameldin, Hussien F., Awad, Sherine, Boucher, Elmar, Caldwell, Adam, Cartwright, Reed, Charbonneau, Amanda, Constantinides, Bede, Edvenson, Greg, Fay, Scott, Fenton, Jacob, Fenzl, Thomas, Fish, Jordan, Garcia-Gutierrez, Leonor, Garland, Phillip, Gluck, Jonathan, González, Iván, Guermond, Sarah, Guo, Jiarong, Gupta, Aditi, Herr, Joshua R., Howe, Adina, Hyer, Alex, Härpfer, Andreas, Irber, Luiz, Kidd, Rhys, Lin, David, Lippi, Justin, Mansour, Tamer, McA'Nulty, Pamela, McDonald, Eric, Mizzi, Jessica, Murray, Kevin D., Nahum, Joshua R., Nanlohy, Kaben, Nederbragt, Alexander Johan, Ortiz-Zuazaga, Humberto, Ory, Jeramia, Pell, Jason, Pepe-Ranney, Charles, Russ, Zachary N., Schwarz, Erich, Scott, Camille, Seaman, Josiah, Sievert, Scott, Simpson, Jared, Skennerton, Connor T., Spencer, James, Srinivasan, Ramakrishnan, Standage, Daniel, Stapleton, James A., Steinman, Susan R., Stein, Joe, Taylor, Benjamin, Trimble, Will, Wiencko, Heather L., Wright, Michael, Wyss, Brian, Zhang, Qingpeng, zyme, en, Brown, C. Titus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2015
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608353/
https://www.ncbi.nlm.nih.gov/pubmed/26535114
http://dx.doi.org/10.12688/f1000research.6924.1

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608353/
https://www.ncbi.nlm.nih.gov/pubmed/26535114
http://dx.doi.org/10.12688/f1000research.6924.1

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