Accelerating Smith-Waterman Alignment for Protein Database Search Using Frequency Distance Filtration Scheme Based on CPU-GPU Collaborative System

The Smith-Waterman (SW) algorithm has been widely utilized for searching biological sequence databases in bioinformatics. Recently, several works have adopted the graphic card with Graphic Processing Units (GPUs) and their associated CUDA model to enhance the performance of SW computations. However,...

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Detalles Bibliográficos
Autores principales: Liu, Yu, Hong, Yang, Lin, Chun-Yuan, Hung, Che-Lun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2015
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629039/
https://www.ncbi.nlm.nih.gov/pubmed/26568953
http://dx.doi.org/10.1155/2015/761063

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629039/
https://www.ncbi.nlm.nih.gov/pubmed/26568953
http://dx.doi.org/10.1155/2015/761063

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