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A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the firs...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629863/ https://www.ncbi.nlm.nih.gov/pubmed/26524296 http://dx.doi.org/10.1107/S1600577515017816 |
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author | Wang, Hongxin Yoda, Yoshitaka Ogata, Hideaki Tanaka, Yoshihito Lubitz, Wolfgang |
author_facet | Wang, Hongxin Yoda, Yoshitaka Ogata, Hideaki Tanaka, Yoshihito Lubitz, Wolfgang |
author_sort | Wang, Hongxin |
collection | PubMed |
description | Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni–R structure, it did not predict the Ni–H–Fe wag mode at ∼675 cm(−1) before NRVS. Instead, the observed Ni–H–Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni–R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni–H–Fe wag mode in a Ni–R sample. As a methodology, the results presented here will go beyond Ni–R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features. |
format | Online Article Text |
id | pubmed-4629863 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-46298632016-11-01 A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase Wang, Hongxin Yoda, Yoshitaka Ogata, Hideaki Tanaka, Yoshihito Lubitz, Wolfgang J Synchrotron Radiat Feature Articles Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni–R structure, it did not predict the Ni–H–Fe wag mode at ∼675 cm(−1) before NRVS. Instead, the observed Ni–H–Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni–R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni–H–Fe wag mode in a Ni–R sample. As a methodology, the results presented here will go beyond Ni–R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features. International Union of Crystallography 2015-10-23 /pmc/articles/PMC4629863/ /pubmed/26524296 http://dx.doi.org/10.1107/S1600577515017816 Text en © International Union of Crystallography 2015 http://journals.iucr.org/services/termsofuse.html This is an open-access article distributed under the terms described at http://journals.iucr.org/services/termsofuse.html. |
spellingShingle | Feature Articles Wang, Hongxin Yoda, Yoshitaka Ogata, Hideaki Tanaka, Yoshihito Lubitz, Wolfgang A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title | A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title_full | A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title_fullStr | A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title_full_unstemmed | A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title_short | A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase |
title_sort | strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [nife] hydrogenase |
topic | Feature Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629863/ https://www.ncbi.nlm.nih.gov/pubmed/26524296 http://dx.doi.org/10.1107/S1600577515017816 |
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