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A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase

Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the firs...

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Autores principales: Wang, Hongxin, Yoda, Yoshitaka, Ogata, Hideaki, Tanaka, Yoshihito, Lubitz, Wolfgang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629863/
https://www.ncbi.nlm.nih.gov/pubmed/26524296
http://dx.doi.org/10.1107/S1600577515017816
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author Wang, Hongxin
Yoda, Yoshitaka
Ogata, Hideaki
Tanaka, Yoshihito
Lubitz, Wolfgang
author_facet Wang, Hongxin
Yoda, Yoshitaka
Ogata, Hideaki
Tanaka, Yoshihito
Lubitz, Wolfgang
author_sort Wang, Hongxin
collection PubMed
description Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni–R structure, it did not predict the Ni–H–Fe wag mode at ∼675 cm(−1) before NRVS. Instead, the observed Ni–H–Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni–R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni–H–Fe wag mode in a Ni–R sample. As a methodology, the results presented here will go beyond Ni–R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features.
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spelling pubmed-46298632016-11-01 A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase Wang, Hongxin Yoda, Yoshitaka Ogata, Hideaki Tanaka, Yoshihito Lubitz, Wolfgang J Synchrotron Radiat Feature Articles Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm(−1) is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni–R structure, it did not predict the Ni–H–Fe wag mode at ∼675 cm(−1) before NRVS. Instead, the observed Ni–H–Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni–R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni–H–Fe wag mode in a Ni–R sample. As a methodology, the results presented here will go beyond Ni–R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features. International Union of Crystallography 2015-10-23 /pmc/articles/PMC4629863/ /pubmed/26524296 http://dx.doi.org/10.1107/S1600577515017816 Text en © International Union of Crystallography 2015 http://journals.iucr.org/services/termsofuse.html This is an open-access article distributed under the terms described at http://journals.iucr.org/services/termsofuse.html.
spellingShingle Feature Articles
Wang, Hongxin
Yoda, Yoshitaka
Ogata, Hideaki
Tanaka, Yoshihito
Lubitz, Wolfgang
A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title_full A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title_fullStr A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title_full_unstemmed A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title_short A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
title_sort strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [nife] hydrogenase
topic Feature Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629863/
https://www.ncbi.nlm.nih.gov/pubmed/26524296
http://dx.doi.org/10.1107/S1600577515017816
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