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Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations

Network models are a well established tool for studying the robustness of complex systems, including modelling the effect of loss of function mutations in protein interaction networks. Past work has concentrated on average damage caused by random node removal, with little attention to the shape of t...

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Detalles Bibliográficos
Autores principales: Lehtinen, Sonja, Bähler, Jürg, Orengo, Christine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644955/
https://www.ncbi.nlm.nih.gov/pubmed/26568486
http://dx.doi.org/10.1038/srep16726
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author Lehtinen, Sonja
Bähler, Jürg
Orengo, Christine
author_facet Lehtinen, Sonja
Bähler, Jürg
Orengo, Christine
author_sort Lehtinen, Sonja
collection PubMed
description Network models are a well established tool for studying the robustness of complex systems, including modelling the effect of loss of function mutations in protein interaction networks. Past work has concentrated on average damage caused by random node removal, with little attention to the shape of the damage distribution. In this work, we use fission yeast co-expression networks before and after exposure to stress to model the effect of stress on mutational robustness. We find that exposure to stress decreases the average damage from node removal, suggesting stress induces greater tolerance to loss of function mutations. The shape of the damage distribution is also changed upon stress, with a greater incidence of extreme damage after exposure to stress. We demonstrate that the change in shape of the damage distribution can have considerable functional consequences, highlighting the need to consider the damage distribution in addition to average behaviour.
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spelling pubmed-46449552015-11-20 Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations Lehtinen, Sonja Bähler, Jürg Orengo, Christine Sci Rep Article Network models are a well established tool for studying the robustness of complex systems, including modelling the effect of loss of function mutations in protein interaction networks. Past work has concentrated on average damage caused by random node removal, with little attention to the shape of the damage distribution. In this work, we use fission yeast co-expression networks before and after exposure to stress to model the effect of stress on mutational robustness. We find that exposure to stress decreases the average damage from node removal, suggesting stress induces greater tolerance to loss of function mutations. The shape of the damage distribution is also changed upon stress, with a greater incidence of extreme damage after exposure to stress. We demonstrate that the change in shape of the damage distribution can have considerable functional consequences, highlighting the need to consider the damage distribution in addition to average behaviour. Nature Publishing Group 2015-11-16 /pmc/articles/PMC4644955/ /pubmed/26568486 http://dx.doi.org/10.1038/srep16726 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Lehtinen, Sonja
Bähler, Jürg
Orengo, Christine
Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title_full Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title_fullStr Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title_full_unstemmed Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title_short Co-Expression Network Models Suggest that Stress Increases Tolerance to Mutations
title_sort co-expression network models suggest that stress increases tolerance to mutations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644955/
https://www.ncbi.nlm.nih.gov/pubmed/26568486
http://dx.doi.org/10.1038/srep16726
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