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Reverse Electron Transfer Completes the Catalytic Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase
[Image: see text] Escherichia coli class Ia ribonucleotide reductase is composed of two subunits (α and β), which form an α2β2 complex that catalyzes the conversion of nucleoside 5′-diphosphates to deoxynucleotides (dNDPs). β2 contains the essential tyrosyl radical (Y(122)(•)) that generates a thiyl...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678968/ https://www.ncbi.nlm.nih.gov/pubmed/26492582 http://dx.doi.org/10.1021/jacs.5b09189 |
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author | Ravichandran, Kanchana R. Minnihan, Ellen C. Wei, Yifeng Nocera, Daniel G. Stubbe, JoAnne |
author_facet | Ravichandran, Kanchana R. Minnihan, Ellen C. Wei, Yifeng Nocera, Daniel G. Stubbe, JoAnne |
author_sort | Ravichandran, Kanchana R. |
collection | PubMed |
description | [Image: see text] Escherichia coli class Ia ribonucleotide reductase is composed of two subunits (α and β), which form an α2β2 complex that catalyzes the conversion of nucleoside 5′-diphosphates to deoxynucleotides (dNDPs). β2 contains the essential tyrosyl radical (Y(122)(•)) that generates a thiyl radical (C(439)(•)) in α2 where dNDPs are made. This oxidation occurs over 35 Å through a pathway of amino acid radical intermediates (Y(122) → [W(48)] → Y(356) in β2 to Y(731) → Y(730) → C(439) in α2). However, chemistry is preceded by a slow protein conformational change(s) that prevents observation of these intermediates. 2,3,5-Trifluorotyrosine site-specifically inserted at position 122 of β2 (F(3)Y(•)-β2) perturbs its conformation and the driving force for radical propagation, while maintaining catalytic activity (1.7 s(–1)). Rapid freeze–quench electron paramagnetic resonance spectroscopy and rapid chemical-quench analysis of the F(3)Y(•)-β2, α2, CDP, and ATP (effector) reaction show generation of 0.5 equiv of Y(356)(•) and 0.5 equiv of dCDP, both at 30 s(–1). In the absence of an external reducing system, Y(356)(•) reduction occurs concomitant with F(3)Y reoxidation (0.4 s(–1)) and subsequent to oxidation of all α2s. In the presence of a reducing system, a burst of dCDP (0.4 equiv at 22 s(–1)) is observed prior to steady-state turnover (1.7 s(–1)). The [Y(356)(•)] does not change, consistent with rate-limiting F(3)Y reoxidation. The data support a mechanism where Y(122)(•) is reduced and reoxidized on each turnover and demonstrate for the first time the ability of a pathway radical in an active α2β2 complex to complete the catalytic cycle. |
format | Online Article Text |
id | pubmed-4678968 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-46789682016-10-22 Reverse Electron Transfer Completes the Catalytic Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase Ravichandran, Kanchana R. Minnihan, Ellen C. Wei, Yifeng Nocera, Daniel G. Stubbe, JoAnne J Am Chem Soc [Image: see text] Escherichia coli class Ia ribonucleotide reductase is composed of two subunits (α and β), which form an α2β2 complex that catalyzes the conversion of nucleoside 5′-diphosphates to deoxynucleotides (dNDPs). β2 contains the essential tyrosyl radical (Y(122)(•)) that generates a thiyl radical (C(439)(•)) in α2 where dNDPs are made. This oxidation occurs over 35 Å through a pathway of amino acid radical intermediates (Y(122) → [W(48)] → Y(356) in β2 to Y(731) → Y(730) → C(439) in α2). However, chemistry is preceded by a slow protein conformational change(s) that prevents observation of these intermediates. 2,3,5-Trifluorotyrosine site-specifically inserted at position 122 of β2 (F(3)Y(•)-β2) perturbs its conformation and the driving force for radical propagation, while maintaining catalytic activity (1.7 s(–1)). Rapid freeze–quench electron paramagnetic resonance spectroscopy and rapid chemical-quench analysis of the F(3)Y(•)-β2, α2, CDP, and ATP (effector) reaction show generation of 0.5 equiv of Y(356)(•) and 0.5 equiv of dCDP, both at 30 s(–1). In the absence of an external reducing system, Y(356)(•) reduction occurs concomitant with F(3)Y reoxidation (0.4 s(–1)) and subsequent to oxidation of all α2s. In the presence of a reducing system, a burst of dCDP (0.4 equiv at 22 s(–1)) is observed prior to steady-state turnover (1.7 s(–1)). The [Y(356)(•)] does not change, consistent with rate-limiting F(3)Y reoxidation. The data support a mechanism where Y(122)(•) is reduced and reoxidized on each turnover and demonstrate for the first time the ability of a pathway radical in an active α2β2 complex to complete the catalytic cycle. American Chemical Society 2015-10-22 2015-11-18 /pmc/articles/PMC4678968/ /pubmed/26492582 http://dx.doi.org/10.1021/jacs.5b09189 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Ravichandran, Kanchana R. Minnihan, Ellen C. Wei, Yifeng Nocera, Daniel G. Stubbe, JoAnne Reverse Electron Transfer Completes the Catalytic Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title | Reverse Electron Transfer Completes the Catalytic
Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title_full | Reverse Electron Transfer Completes the Catalytic
Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title_fullStr | Reverse Electron Transfer Completes the Catalytic
Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title_full_unstemmed | Reverse Electron Transfer Completes the Catalytic
Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title_short | Reverse Electron Transfer Completes the Catalytic
Cycle in a 2,3,5-Trifluorotyrosine-Substituted Ribonucleotide Reductase |
title_sort | reverse electron transfer completes the catalytic
cycle in a 2,3,5-trifluorotyrosine-substituted ribonucleotide reductase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4678968/ https://www.ncbi.nlm.nih.gov/pubmed/26492582 http://dx.doi.org/10.1021/jacs.5b09189 |
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