Cargando…

Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus

In this study, the recombinant α-l-arabinofuranosidase from the fungus Pleurotus ostreatus (rPoAbf) was subjected to site-directed mutagenesis in order to identify the catalytic nucleophile residue. Based on bioinformatics and homology modelling analyses, E449 was revealed to be the potential nucleo...

Descripción completa

Detalles Bibliográficos
Autores principales: Amore, Antonella, Iadonisi, Alfonso, Vincent, Florence, Faraco, Vincenza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686458/
https://www.ncbi.nlm.nih.gov/pubmed/26690659
http://dx.doi.org/10.1186/s13568-015-0164-x
_version_ 1782406440557740032
author Amore, Antonella
Iadonisi, Alfonso
Vincent, Florence
Faraco, Vincenza
author_facet Amore, Antonella
Iadonisi, Alfonso
Vincent, Florence
Faraco, Vincenza
author_sort Amore, Antonella
collection PubMed
description In this study, the recombinant α-l-arabinofuranosidase from the fungus Pleurotus ostreatus (rPoAbf) was subjected to site-directed mutagenesis in order to identify the catalytic nucleophile residue. Based on bioinformatics and homology modelling analyses, E449 was revealed to be the potential nucleophilic residue. Thus, the mutant E449G of PoAbf was recombinantly expressed in Pichia pastoris and its recombinant expression level and reactivity were investigated in comparison to the wild-type. The design of a suitable set of hydrolysis experiments in the presence or absence of alcoholic arabinosyl acceptors and/or formate salts allowed to unambiguously identify the residue E449 as the nucleophile residue involved in the retaining mechanism of this GH51 arabinofuranosidase. (1)H NMR analysis was applied for the identification of the products and the assignement of their anomeric configuration.
format Online
Article
Text
id pubmed-4686458
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Springer Berlin Heidelberg
record_format MEDLINE/PubMed
spelling pubmed-46864582015-12-23 Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus Amore, Antonella Iadonisi, Alfonso Vincent, Florence Faraco, Vincenza AMB Express Original Article In this study, the recombinant α-l-arabinofuranosidase from the fungus Pleurotus ostreatus (rPoAbf) was subjected to site-directed mutagenesis in order to identify the catalytic nucleophile residue. Based on bioinformatics and homology modelling analyses, E449 was revealed to be the potential nucleophilic residue. Thus, the mutant E449G of PoAbf was recombinantly expressed in Pichia pastoris and its recombinant expression level and reactivity were investigated in comparison to the wild-type. The design of a suitable set of hydrolysis experiments in the presence or absence of alcoholic arabinosyl acceptors and/or formate salts allowed to unambiguously identify the residue E449 as the nucleophile residue involved in the retaining mechanism of this GH51 arabinofuranosidase. (1)H NMR analysis was applied for the identification of the products and the assignement of their anomeric configuration. Springer Berlin Heidelberg 2015-12-21 /pmc/articles/PMC4686458/ /pubmed/26690659 http://dx.doi.org/10.1186/s13568-015-0164-x Text en © Amore et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Amore, Antonella
Iadonisi, Alfonso
Vincent, Florence
Faraco, Vincenza
Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title_full Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title_fullStr Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title_full_unstemmed Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title_short Identification of the nucleophile catalytic residue of GH51 α-l-arabinofuranosidase from Pleurotus ostreatus
title_sort identification of the nucleophile catalytic residue of gh51 α-l-arabinofuranosidase from pleurotus ostreatus
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4686458/
https://www.ncbi.nlm.nih.gov/pubmed/26690659
http://dx.doi.org/10.1186/s13568-015-0164-x
work_keys_str_mv AT amoreantonella identificationofthenucleophilecatalyticresidueofgh51alarabinofuranosidasefrompleurotusostreatus
AT iadonisialfonso identificationofthenucleophilecatalyticresidueofgh51alarabinofuranosidasefrompleurotusostreatus
AT vincentflorence identificationofthenucleophilecatalyticresidueofgh51alarabinofuranosidasefrompleurotusostreatus
AT faracovincenza identificationofthenucleophilecatalyticresidueofgh51alarabinofuranosidasefrompleurotusostreatus