Cargando…

Meta-Analysis of DNA Tumor-Viral Integration Site Selection Indicates a Role for Repeats, Gene Expression and Epigenetics

Oncoviruses cause tremendous global cancer burden. For several DNA tumor viruses, human genome integration is consistently associated with cancer development. However, genomic features associated with tumor viral integration are poorly understood. We sought to define genomic determinants for 1897 lo...

Descripción completa

Detalles Bibliográficos
Autores principales:	Doolittle-Hall, Janet M., Cunningham Glasspoole, Danielle L., Seaman, William T., Webster-Cyriaque, Jennifer
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4695887/ https://www.ncbi.nlm.nih.gov/pubmed/26569308 http://dx.doi.org/10.3390/cancers7040887

Ejemplares similares

Polymicrobial Infection and Bacterium-Mediated Epigenetic Modification of DNA Tumor Viruses Contribute to Pathogenesis
por: Doolittle, J. M., et al.
Publicado: (2014)

Retroviral DNA Integration: Viral and Cellular Determinants of Target-Site Selection
por: Lewinski, Mary K, et al.
Publicado: (2006)

Discoveries in Molecular Genetics with the Adenovirus 12 System: Integration of Viral DNA and Epigenetic Consequences
por: Doerfler, Walter
Publicado: (2017)

CTCF regulates the local epigenetic state of ribosomal DNA repeats
por: van de Nobelen, Suzanne, et al.
Publicado: (2010)

Selection of Target Sites for Mobile DNA Integration in the Human Genome
por: Berry, Charles, et al.
Publicado: (2006)

Expression of the repeat genome and aberrant epigenetic factors in cancer
por: Carone, Dawn M, et al.
Publicado: (2013)

Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers
por: Tsumagari, Koji, et al.
Publicado: (2008)

Herpesvirus telomeric repeats facilitate genomic integration into host telomeres and mobilization of viral DNA during reactivation
por: Kaufer, Benedikt B., et al.
Publicado: (2011)

Investigating site-selection mechanisms of retroviral integration in supercoiled DNA braids
por: Forte, G., et al.
Publicado: (2021)

viruSITE—integrated database for viral genomics
por: Stano, Matej, et al.
Publicado: (2016)

Retroviral Integration Site Selection
por: Desfarges, Sébastien, et al.
Publicado: (2010)

Detection and quantitation of HPV in genital and oral tissues and fluids by real time PCR
por: Seaman, William T, et al.
Publicado: (2010)

Plant viral intergenic DNA sequence repeats with transcription enhancing activity
por: Velten, Jeff, et al.
Publicado: (2005)

Epigenetic rewriting at centromeric DNA repeats leads to increased chromatin accessibility and chromosomal instability
por: Decombe, Sheldon, et al.
Publicado: (2021)

Longitudinal DNA methylation dynamics as a practical indicator in clinical epigenetics
por: Komaki, Shohei, et al.
Publicado: (2021)

Epigenetics and Triplet-Repeat Neurological Diseases
por: Nageshwaran, Sathiji, et al.
Publicado: (2015)

HIV-associated salivary gland disease: a role for BK birus
por: Jeffers, Liesl Kerlyn, et al.
Publicado: (2010)

Human BK Polyomavirus—The Potential for Head and Neck Malignancy and Disease
por: Burger-Calderon, Raquel, et al.
Publicado: (2015)

Link between short tandem repeats and translation initiation site selection
por: Arabfard, Masoud, et al.
Publicado: (2018)

Retroviral integration: Site matters: Mechanisms and consequences of retroviral integration site selection
por: Demeulemeester, Jonas, et al.
Publicado: (2015)

Detection and quantitation of HPV in anogenital and oral tissues and fluids of HIV-positive individuals by real-time PCR
por: Seaman, William T, et al.
Publicado: (2010)

Oral SARS-CoV-2 host responses predict the early COVID-19 disease course
por: Seaman, William T, et al.
Publicado: (2023)

Methodology and software to detect viral integration site hot-spots
por: Presson, Angela P, et al.
Publicado: (2011)

Nucleosome DNA unwrapping does not affect prototype foamy virus integration efficiency or site selection
por: Mackler, Randi M., et al.
Publicado: (2019)

Site-Specific DNA Demethylation as a Potential Target for Cancer Epigenetic Therapy
por: Neja, Sultan Abda
Publicado: (2020)

Epigenetic Control of Viral Life-Cycle by a DNA-Methylation Dependent Transcription Factor
por: Flower, Kirsty, et al.
Publicado: (2011)

CRISPR DNA elements controlling site-specific spacer integration and proper repeat length by a Type II CRISPR–Cas system
por: Kim, Jenny G, et al.
Publicado: (2019)

Molecular mechanisms of retroviral integration site selection
por: Kvaratskhelia, Mamuka, et al.
Publicado: (2014)

DNA‐assisted site‐selective protein modification
por: Keijzer, Jordi F., et al.
Publicado: (2021)

Site selective reading of epigenetic markers by a dual-mode synthetic receptor array
por: Liu, Yang, et al.
Publicado: (2017)

HPV Genotyping and Site of Viral Integration in Cervical Cancers in Indian Women
por: Das, Poulami, et al.
Publicado: (2012)

Identifying viral integration sites using SeqMap 2.0
por: Hawkins, Troy B., et al.
Publicado: (2011)

Human Immunodeficiency Virus (HIV)-1 Integration Sites in Viral Latency
por: Rezaei, Simin D., et al.
Publicado: (2015)

Selective increase in subtelomeric DNA methylation: an epigenetic biomarker for malignant glioma
por: Choudhury, Samrat Roy, et al.
Publicado: (2015)

Epigenetic Regulation of Viral Biological Processes
por: Balakrishnan, Lata, et al.
Publicado: (2017)

Epigenetic and epitranscriptomic regulation of viral replication
por: Tsai, Kevin, et al.
Publicado: (2020)

Plant 45S rDNA Clusters Are Fragile Sites and Their Instability Is Associated with Epigenetic Alterations
por: Huang, Min, et al.
Publicado: (2012)

Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation
por: Gruber, David R, et al.
Publicado: (2018)

Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
por: Ward-Caviness, Cavin K., et al.
Publicado: (2018)

Parvovirus B19 DNA CpG Dinucleotide Methylation and Epigenetic Regulation of Viral Expression
por: Bonvicini, Francesca, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_ur387nd1lktm69lik40g6qhiou