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GlyTouCan 1.0 – The international glycan structure repository
Glycans are known as the third major class of biopolymers, next to DNA and proteins. They cover the surfaces of many cells, serving as the ‘face’ of cells, whereby other biomolecules and viruses interact. The structure of glycans, however, differs greatly from DNA and proteins in that they are branc...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702779/ https://www.ncbi.nlm.nih.gov/pubmed/26476458 http://dx.doi.org/10.1093/nar/gkv1041 |
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author | Aoki-Kinoshita, Kiyoko Agravat, Sanjay Aoki, Nobuyuki P. Arpinar, Sena Cummings, Richard D. Fujita, Akihiro Fujita, Noriaki Hart, Gerald M. Haslam, Stuart M. Kawasaki, Toshisuke Matsubara, Masaaki Moreman, Kelley W. Okuda, Shujiro Pierce, Michael Ranzinger, René Shikanai, Toshihide Shinmachi, Daisuke Solovieva, Elena Suzuki, Yoshinori Tsuchiya, Shinichiro Yamada, Issaku York, William S. Zaia, Joseph Narimatsu, Hisashi |
author_facet | Aoki-Kinoshita, Kiyoko Agravat, Sanjay Aoki, Nobuyuki P. Arpinar, Sena Cummings, Richard D. Fujita, Akihiro Fujita, Noriaki Hart, Gerald M. Haslam, Stuart M. Kawasaki, Toshisuke Matsubara, Masaaki Moreman, Kelley W. Okuda, Shujiro Pierce, Michael Ranzinger, René Shikanai, Toshihide Shinmachi, Daisuke Solovieva, Elena Suzuki, Yoshinori Tsuchiya, Shinichiro Yamada, Issaku York, William S. Zaia, Joseph Narimatsu, Hisashi |
author_sort | Aoki-Kinoshita, Kiyoko |
collection | PubMed |
description | Glycans are known as the third major class of biopolymers, next to DNA and proteins. They cover the surfaces of many cells, serving as the ‘face’ of cells, whereby other biomolecules and viruses interact. The structure of glycans, however, differs greatly from DNA and proteins in that they are branched, as opposed to linear sequences of amino acids or nucleotides. Therefore, the storage of glycan information in databases, let alone their curation, has been a difficult problem. This has caused many duplicated efforts when integration is attempted between different databases, making an international repository for glycan structures, where unique accession numbers are assigned to every identified glycan structure, necessary. As such, an international team of developers and glycobiologists have collaborated to develop this repository, called GlyTouCan and is available at http://glytoucan.org/, to provide a centralized resource for depositing glycan structures, compositions and topologies, and to retrieve accession numbers for each of these registered entries. This will thus enable researchers to reference glycan structures simply by accession number, as opposed to by chemical structure, which has been a burden to integrate glycomics databases in the past. |
format | Online Article Text |
id | pubmed-4702779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-47027792016-01-07 GlyTouCan 1.0 – The international glycan structure repository Aoki-Kinoshita, Kiyoko Agravat, Sanjay Aoki, Nobuyuki P. Arpinar, Sena Cummings, Richard D. Fujita, Akihiro Fujita, Noriaki Hart, Gerald M. Haslam, Stuart M. Kawasaki, Toshisuke Matsubara, Masaaki Moreman, Kelley W. Okuda, Shujiro Pierce, Michael Ranzinger, René Shikanai, Toshihide Shinmachi, Daisuke Solovieva, Elena Suzuki, Yoshinori Tsuchiya, Shinichiro Yamada, Issaku York, William S. Zaia, Joseph Narimatsu, Hisashi Nucleic Acids Res Database Issue Glycans are known as the third major class of biopolymers, next to DNA and proteins. They cover the surfaces of many cells, serving as the ‘face’ of cells, whereby other biomolecules and viruses interact. The structure of glycans, however, differs greatly from DNA and proteins in that they are branched, as opposed to linear sequences of amino acids or nucleotides. Therefore, the storage of glycan information in databases, let alone their curation, has been a difficult problem. This has caused many duplicated efforts when integration is attempted between different databases, making an international repository for glycan structures, where unique accession numbers are assigned to every identified glycan structure, necessary. As such, an international team of developers and glycobiologists have collaborated to develop this repository, called GlyTouCan and is available at http://glytoucan.org/, to provide a centralized resource for depositing glycan structures, compositions and topologies, and to retrieve accession numbers for each of these registered entries. This will thus enable researchers to reference glycan structures simply by accession number, as opposed to by chemical structure, which has been a burden to integrate glycomics databases in the past. Oxford University Press 2016-01-04 2015-10-17 /pmc/articles/PMC4702779/ /pubmed/26476458 http://dx.doi.org/10.1093/nar/gkv1041 Text en © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Aoki-Kinoshita, Kiyoko Agravat, Sanjay Aoki, Nobuyuki P. Arpinar, Sena Cummings, Richard D. Fujita, Akihiro Fujita, Noriaki Hart, Gerald M. Haslam, Stuart M. Kawasaki, Toshisuke Matsubara, Masaaki Moreman, Kelley W. Okuda, Shujiro Pierce, Michael Ranzinger, René Shikanai, Toshihide Shinmachi, Daisuke Solovieva, Elena Suzuki, Yoshinori Tsuchiya, Shinichiro Yamada, Issaku York, William S. Zaia, Joseph Narimatsu, Hisashi GlyTouCan 1.0 – The international glycan structure repository |
title | GlyTouCan 1.0 – The international glycan structure repository |
title_full | GlyTouCan 1.0 – The international glycan structure repository |
title_fullStr | GlyTouCan 1.0 – The international glycan structure repository |
title_full_unstemmed | GlyTouCan 1.0 – The international glycan structure repository |
title_short | GlyTouCan 1.0 – The international glycan structure repository |
title_sort | glytoucan 1.0 – the international glycan structure repository |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4702779/ https://www.ncbi.nlm.nih.gov/pubmed/26476458 http://dx.doi.org/10.1093/nar/gkv1041 |
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