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Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD
BACKGROUND: Autosomal dominant polycystic kidney disease (ADPKD) is a monogenic disorder and is a common genetic cause of chronic renal failure in children and adults. The enzyme renin plays a key role in the RAAS cascade and an important role in the development of hypertension and progression of re...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710007/ https://www.ncbi.nlm.nih.gov/pubmed/26753721 http://dx.doi.org/10.1186/s12929-015-0217-0 |
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author | Ramanathan, Gnanasambandan Elumalai, Ramprasad Periyasamy, Soundararajan Lakkakula, Bhaskar V. K. S. |
author_facet | Ramanathan, Gnanasambandan Elumalai, Ramprasad Periyasamy, Soundararajan Lakkakula, Bhaskar V. K. S. |
author_sort | Ramanathan, Gnanasambandan |
collection | PubMed |
description | BACKGROUND: Autosomal dominant polycystic kidney disease (ADPKD) is a monogenic disorder and is a common genetic cause of chronic renal failure in children and adults. The enzyme renin plays a key role in the RAAS cascade and an important role in the development of hypertension and progression of renal disease in ADPKD. The present study is aimed to investigate the potential modifier effect of REN gene polymorphisms on the progression of chronic kidney disease (CKD) in ADPKD. METHODS: We analyzed 102 ADPKD patients and 106 healthy controls from the same geographic area. FRET-based KASPar single-nucleotide polymorphism (SNP) genotyping assays for REN gene tag-SNPs (rs2887284, rs2368564, rs1464816, rs7521667, rs10900555, rs6693954, rs6676670 and rs11571078) were performed. Cochran-Armitage trend test was used to assess the potential associations between these polymorphisms and CKD stages. Haplotype frequencies and LD measures were estimated by using the software Haploview. Mantel-Haenszel stratified analysis was used to explore confounding and interaction effects of these polymorphisms. RESULTS: Of the eight tag-SNPs genotyped, the rs10900555 polymorphism deviated from the Hardy-Weinberg equilibrium in controls. The presence of ADPKD in general was not significantly associated with the REN tag-SNPs included in this study. Linkage disequilibrium analysis yielded three haplotype blocks and the haplotypes of the respective blocks are not statistically different between ADPKD and controls. In multivariate analysis, the rs1464816 TG genotype showed a significant association with the advancement of CKD in ADPKD (OR = 4.80; 95 % CI = 1.30–17.82; p = 0.019). CONCLUSIONS: The present study provides evidence that the rs1464816 polymorphism in REN is associated with CKD progression in ADPKD. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12929-015-0217-0) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4710007 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-47100072016-01-13 Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD Ramanathan, Gnanasambandan Elumalai, Ramprasad Periyasamy, Soundararajan Lakkakula, Bhaskar V. K. S. J Biomed Sci Research BACKGROUND: Autosomal dominant polycystic kidney disease (ADPKD) is a monogenic disorder and is a common genetic cause of chronic renal failure in children and adults. The enzyme renin plays a key role in the RAAS cascade and an important role in the development of hypertension and progression of renal disease in ADPKD. The present study is aimed to investigate the potential modifier effect of REN gene polymorphisms on the progression of chronic kidney disease (CKD) in ADPKD. METHODS: We analyzed 102 ADPKD patients and 106 healthy controls from the same geographic area. FRET-based KASPar single-nucleotide polymorphism (SNP) genotyping assays for REN gene tag-SNPs (rs2887284, rs2368564, rs1464816, rs7521667, rs10900555, rs6693954, rs6676670 and rs11571078) were performed. Cochran-Armitage trend test was used to assess the potential associations between these polymorphisms and CKD stages. Haplotype frequencies and LD measures were estimated by using the software Haploview. Mantel-Haenszel stratified analysis was used to explore confounding and interaction effects of these polymorphisms. RESULTS: Of the eight tag-SNPs genotyped, the rs10900555 polymorphism deviated from the Hardy-Weinberg equilibrium in controls. The presence of ADPKD in general was not significantly associated with the REN tag-SNPs included in this study. Linkage disequilibrium analysis yielded three haplotype blocks and the haplotypes of the respective blocks are not statistically different between ADPKD and controls. In multivariate analysis, the rs1464816 TG genotype showed a significant association with the advancement of CKD in ADPKD (OR = 4.80; 95 % CI = 1.30–17.82; p = 0.019). CONCLUSIONS: The present study provides evidence that the rs1464816 polymorphism in REN is associated with CKD progression in ADPKD. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12929-015-0217-0) contains supplementary material, which is available to authorized users. BioMed Central 2016-01-11 /pmc/articles/PMC4710007/ /pubmed/26753721 http://dx.doi.org/10.1186/s12929-015-0217-0 Text en © Ramanathan et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Ramanathan, Gnanasambandan Elumalai, Ramprasad Periyasamy, Soundararajan Lakkakula, Bhaskar V. K. S. Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title | Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title_full | Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title_fullStr | Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title_full_unstemmed | Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title_short | Renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in ADPKD |
title_sort | renin gene rs1464816 polymorphism contributes to chronic kidney disease progression in adpkd |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4710007/ https://www.ncbi.nlm.nih.gov/pubmed/26753721 http://dx.doi.org/10.1186/s12929-015-0217-0 |
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