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Universal Poisson Statistics of mRNAs with Complex Decay Pathways

Messenger RNA (mRNA) dynamics in single cells are often modeled as a memoryless birth-death process with a constant probability per unit time that an mRNA molecule is synthesized or degraded. This predicts a Poisson steady-state distribution of mRNA number, in close agreement with experiments. This...

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Autor principal: Thattai, Mukund
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Biophysical Society 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724633/
https://www.ncbi.nlm.nih.gov/pubmed/26743048
http://dx.doi.org/10.1016/j.bpj.2015.12.001
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author Thattai, Mukund
author_facet Thattai, Mukund
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description Messenger RNA (mRNA) dynamics in single cells are often modeled as a memoryless birth-death process with a constant probability per unit time that an mRNA molecule is synthesized or degraded. This predicts a Poisson steady-state distribution of mRNA number, in close agreement with experiments. This is surprising, since mRNA decay is known to be a complex process. The paradox is resolved by realizing that the Poisson steady state generalizes to arbitrary mRNA lifetime distributions. A mapping between mRNA dynamics and queueing theory highlights an identifiability problem: a measured Poisson steady state is consistent with a large variety of microscopic models. Here, I provide a rigorous and intuitive explanation for the universality of the Poisson steady state. I show that the mRNA birth-death process and its complex decay variants all take the form of the familiar Poisson law of rare events, under a nonlinear rescaling of time. As a corollary, not only steady-states but also transients are Poisson distributed. Deviations from the Poisson form occur only under two conditions, promoter fluctuations leading to transcriptional bursts or nonindependent degradation of mRNA molecules. These results place severe limits on the power of single-cell experiments to probe microscopic mechanisms, and they highlight the need for single-molecule measurements.
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spelling pubmed-47246332017-01-19 Universal Poisson Statistics of mRNAs with Complex Decay Pathways Thattai, Mukund Biophys J Biophysical Letter Messenger RNA (mRNA) dynamics in single cells are often modeled as a memoryless birth-death process with a constant probability per unit time that an mRNA molecule is synthesized or degraded. This predicts a Poisson steady-state distribution of mRNA number, in close agreement with experiments. This is surprising, since mRNA decay is known to be a complex process. The paradox is resolved by realizing that the Poisson steady state generalizes to arbitrary mRNA lifetime distributions. A mapping between mRNA dynamics and queueing theory highlights an identifiability problem: a measured Poisson steady state is consistent with a large variety of microscopic models. Here, I provide a rigorous and intuitive explanation for the universality of the Poisson steady state. I show that the mRNA birth-death process and its complex decay variants all take the form of the familiar Poisson law of rare events, under a nonlinear rescaling of time. As a corollary, not only steady-states but also transients are Poisson distributed. Deviations from the Poisson form occur only under two conditions, promoter fluctuations leading to transcriptional bursts or nonindependent degradation of mRNA molecules. These results place severe limits on the power of single-cell experiments to probe microscopic mechanisms, and they highlight the need for single-molecule measurements. The Biophysical Society 2016-01-19 2015-12-30 /pmc/articles/PMC4724633/ /pubmed/26743048 http://dx.doi.org/10.1016/j.bpj.2015.12.001 Text en © 2016 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biophysical Letter
Thattai, Mukund
Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title_full Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title_fullStr Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title_full_unstemmed Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title_short Universal Poisson Statistics of mRNAs with Complex Decay Pathways
title_sort universal poisson statistics of mrnas with complex decay pathways
topic Biophysical Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4724633/
https://www.ncbi.nlm.nih.gov/pubmed/26743048
http://dx.doi.org/10.1016/j.bpj.2015.12.001
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