UpCoT: an integrated pipeline tool for clustering upstream DNA sequences of orthologous genes in prokaryotic genomes

UpCoT is a pipeline tool developed by automating the series of steps involved in prediction of cis-regulatory elements. UpCoT generates orthologs for each gene in target genome using bi-directional best blast hit against the reference genomes, then identifies potential orthologous transcriptional un...

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Detalles Bibliográficos
Autores principales: Arun, P. V. Parvati Sai, Prakash, Jogadhenu S. S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2016
Materias:
Original Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755962/
https://www.ncbi.nlm.nih.gov/pubmed/28330144
http://dx.doi.org/10.1007/s13205-016-0363-4

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4755962/
https://www.ncbi.nlm.nih.gov/pubmed/28330144
http://dx.doi.org/10.1007/s13205-016-0363-4

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